[Chimera-users] Fwd: modeling multimers

[Francesco Pietra]

If not clear, the template here is the fasta file. I wonder where Sali's
modeller allows filling residues in a multimer by also taking into account
the inetraction between the different subunits. Not seen any example.
francesco pietra

---------- Forwarded message ----------
From: Francesco Pietra <chiendarret at gmail.com>
Date: Sun, Jun 23, 2013 at 7:17 AM
Subject: modeling multimers
To: chimera <chimera-users at cgl.ucsf.edu>


Hello:
Modeling a trimer (all three chains present, though missing residues and
atoms) with chimera and modeller installed locally.

The default is modeling each chain, one at a time. The chains are identical
in sequence but the X-ray structure shows different localized
conformations. Question: is modeller modeling by taking the other two
chains into account?

If already answered, beg pardon.

thanks

francesco pietra
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