[Chimera-users] Difference between atoms' coordinates on screen and in a PDB file

[Mateusz Dobrychłop]

Hello,

I load 3 protein models into Chimera and enter several "move" commands. The
structures change their positions. Then, I save them as a PDB file, and
immediately open the PDB file. The structures are not overlapping
(screenshot: http://i.imgur.com/gtGBN.png ). Why does it work like this and
what can I do to obtain accurate coordinates on my screen without
re-opening the model (after I finish my sequence of translations)?

Mateusz
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