[Chimera-users] Addition of phosphates to PDB structures

[Elaine Meng]

Hi Carlos,
The only docking program I have ever used is DOCK:
<http://dock.compbio.ucsf.edu/>
...but I should admit that was many years ago.

The superposition approach should be much simpler, and so I personally would not resort to using a docking program unless the superposition approach proves inadequate for some reason.  If you do want to ask for opinions on which docking program to use for this purpose, CCL.net may be a suitable forum, or to ask about DOCK in particular, you could post to dock-fans at docking.org

Best,
Elaine

On May 10, 2012, at 12:07 PM, Donado, Carlos wrote:

> Hi Elaine,
> 
> Thank you for your prompt reply; I will try your suggestions. Also, since you mentioned docking programs, which one would you suggest using in conjunction with Chimera specifically for the purpose of docking ATP into a known ATP binding site?
> 
> Thanks,
> Carlos