[Chimera-users] Need help for using Chimera

A-A_lowie li lowieli at gmail.com
Fri Jun 15 06:24:51 PDT 2012


Dear Prof. Eric & other team member:

        First, thanks for your reply and help.
        As for the platform of my computer, here is the basic information:

        Ubuntu, Release 12.04 (precise) 64-bit
        Kernel Linux 3.2.0-24-generic
        GNOME 3.4.1
        Intel® Core™ i7 CPU 860 @ 2.80GHz × 8
        Memory:5.8G

        As for the shell, i usually use bash :)
        Please let me know how to change the MMTK_ENERGY_THREADS parameter?

        Sincerely thanks for your help.

Lowie


On Fri, Jun 15, 2012 at 1:51 AM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> Hi Lowie,
> You don't have to install MMTK yourself.  It is bundled with Chimera.
>  Also, as this post says:
>
> [Chimera-users] Parallel run<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2010-September/005499.html>
>
> it depends on your platform and personal configuration.  So, what platform
> do you use (Windows/Linux/Mac) and if it's Linux, what shell do you use?
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
> On Jun 14, 2012, at 6:56 AM, A-A_lowie li wrote:
>
> Dear Sir:
>
>         I am a new user of Chimera, but immediately attracted by this
> handy software Chimera.
>
>         Since my model requires a lot of computation time in energy
> minimization, could you please how to set up the environment for parallel
> computation of energy minimization in Chimera?
>
>         On one website, it was said, MMTK ENERGY THREADS could be reset
> for parallel computation.
>
>         After installation of MMTK, I am confused on how to change
> parameter in MMTK, and recompile Chimera (or change Chimera settings ).
>
>        Could you please give me more details about how to set MMTK ENERGY
> THREADS in Chimera?
>
>        Sincerely thanks for your advice.
>
> Lowie
>
>
> --
> Without dream, life is incomplete!
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>
>
>


-- 
Without dream, life is incomplete!
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