[Chimera-users] alpha helix representation problem

larif sofiene larifsofiene at gmail.com
Fri Oct 28 02:57:48 PDT 2011


greeting
after a MD simulation of an in silico induced mutation A80P (located in an
alpha helix) in a monomeric protein i get this strange alpha helix (a wire
represented helix)
http://imageshack.us/photo/my-images/573/alphahelix.jpg/
is it the induced mutation that break down the alpha 3 helix and disturb
orientation of the helix axis or a problem with chimera not recognizing the
helix
(in sequence tool the helix is no more color filled as alpha helix after
inducing mutation)
thank you for this piece of art which is CHIMERA :)
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