[Chimera-users] help with error message

Susan Tsutakawa setsutakawa at lbl.gov
Mon Nov 28 12:52:25 PST 2011


I am opening up a pdb that has been generated after MD simulations. Waters have been removed.

I am getting an unusual error.  I have two pdb files that were generated similarly, but only one gives me the error.

Traceback (most recent call last):
  File "/Applications/Chimera.app/Contents/Resources/share/chimera/tkgui.py", line 343, in openPath
    mols = chimera.openModels.open(path, type=ftype)
  File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 1541, in open
    models = func(filename, *args, **kw)
  File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 770, in _openPDBModel
    errOut=errLog)
error: radius must be positive
Error reading bfactor-911_changed.pdb:
error: radius must be positive

  File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 770, in _openPDBModel
    errOut=errLog)

If someone can help, I would appreciate it.



More information about the Chimera-users mailing list