[Chimera-users] How to select solvent molecule by residue number ?

Marek Maly marek.maly at ujep.cz
Tue Dec 20 08:35:08 PST 2011


Hello,
I just found solution (at least in case of water solvent :)) ).

When one want to select water residue with number N it is necessary do it  
like this:

select :N.water (not just "select :N" which works in case of solute or  
ions )

   Best wishes,

       Marek



Dne Tue, 20 Dec 2011 03:27:12 +0100 Marek Maly <marek.maly at ujep.cz>  
napsal/-a:

> Hello,
> it seems that if some amber trajectory but also PDB containing solvated
> structure/s is
> loaded into Chimera, there is impossible to select by residue number
> (using command SELECT in command line or by dialog SELECT->ATOM  
> SPECIFIER)
> any
> solvent reside (at least in case of WAT solvent).
>
> Am I right ?
>
> Perhaps it is possible but maybe with some more complicated command than
> the usual
>
> select :N
>
> where N is the residue number.
>
> Thanks in advance for any comments !
>
>       Best wishes,
>
>         Marek
>
> PS: I am using alpha version from 18th November, but I remember this
> problem also from previous versions.
>
>
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