[Chimera-users] add custom residues to rotamer library or for swapaa command

[Sabuj Pattanayek]

Sure, that would be helpful.

On Mon, Dec 5, 2011 at 12:58 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> If SwissSideChain doesn't cover your needs I can send you the same info I
> sent the SwissSideChain people so they could get their plugin working.  Your
> rotamers would need to be in Dunbrack format, and then you would still have
> to do some work but not too much.
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
> On Dec 5, 2011, at 10:49 AM, Elaine Meng wrote:
>
> Hi Sabuj,
> There is no user interface way to do that (you'd have to get into code)...
> however, your question is quite timely, as there is a new plugin that
> provides a Rotamers-type interface to hundreds of nonstandard residues.  It
> also makes a new command "swapnaa" to access these residues via command
> line.
>
> This SwissSidechain plugin is provided by the Molecular Modelling Group at
> SIB.  Information and download:
> <http://ludwig-sun1.unil.ch/~dgfeller/SwissSidechain/chimera.html>
>
> You can browse the SwissSidechain database to see if it includes your
> residue of interest:
> <http://ludwig-sun1.unil.ch/~dgfeller/SwissSidechain/table.html>
>
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Dec 5, 2011, at 10:31 AM, Sabuj Pattanayek wrote:
>
> Hi,
>
> How do I add custom residues so that they're usable with swapaa or the
>
> rotamer tool?
>
> Thanks,
>
> Sabuj
>
>
>
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