[Chimera-users] Label all atoms except hydrogens

Eric Pettersen pett at cgl.ucsf.edu
Thu Oct 21 14:30:03 PDT 2010


I hate Reply-To headers!

--Eric

On Oct 21, 2010, at 2:28 PM, Eric Pettersen wrote:

> For future ref, even more concise:  label ~H
>
> maybe you already knew that and just wanted to use something more  
> self explanatory -- if so, I never sent this!
>
> --E
>
> On Oct 21, 2010, at 2:14 PM, Elaine Meng wrote:
>
>> Hi Mike,
>> There are several possible routes to achieving this, but a concise  
>> one is the command:
>>
>> label  ~  element.H
>>
>> where the "~" is a logical NOT.
>> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/atom_spec.html#combinations 
>> >
>>
>> Or, you could label all atoms and then unlabel hydrogens, or do the  
>> menu equivalents of either of those routes.
>>
>> I hope this helps,
>> Elaine
>> ----------
>> Elaine C. Meng, Ph.D.
>> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
>>
>> On Oct 21, 2010, at 1:59 PM, Michael Day wrote:
>>
>>> How would I label all atoms in a structure without labeling  
>>> hydrogen atoms? I'm trying to label a small molecule with about 60  
>>> non-hydrogen atoms.
>>>
>>
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>
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