[Chimera-users] redirecting runCommands output
Bala subramanian
bala.biophysics at gmail.com
Thu Jun 10 04:36:13 PDT 2010
Friends,
I wrote a small script to calculate the distance between two atoms in a list
of pdb files. I would like to know how i can redirect the message that
appears in replyobj to a text file. Some chimera commands like findhbon has
option to save the result in file. But distance command dosent have the
same.
import glob
from chimera import runCommand as rc
filenames=[ fn for fn in glob.glob('*.pdb.*')]
for fn in filenames:
rc("open " + fn)
* rc("distance :1 at CA :166 at CA") # I have to write this distance to a
file.*
rc("close all")
Thank you,
Bala
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