[Chimera-users] reference for saving pdb

[Samuel Coulbourn Flores]

Hi Guys,

I'm having what I am sure is a trivial problem.  When I save my PDB coordinates, I am asked what the reference is, and choose a density map.  But when I read those coordinates back in, they are translated/rotated from where they should be and no longer match the density map.  Can you tell me what is the correct procedure for setting the reference?

Thanks

Sam