[Chimera-users] representing additional residues over ribbons

Elaine Meng meng at cgl.ucsf.edu
Mon Aug 16 13:25:11 PDT 2010


Hi Irene,
I'm not sure I understand your question.  The "repr" command only changes the style of the residue,
regardless of whether the residue is displayed -- it won't display it.  
To display it, you would use a command like:

display :64

Similarly, you could undisplay all atoms/bonds with 

~display

or undisplay selectively, for example

~display :hem

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Aug 16, 2010, at 12:25 PM, Irene Newhouse wrote:

> When I try repr sphere :64 or repr stick :64 over the default presentation of my protein in ribbons [the heme group is in sticks, as are automatically selected residues in close proximity], as suggested in today's user mail, it doesn't work. It only seems to work if all atoms of the protein are displayed. I can only reset the display mode of the residues Chimera has chosen to show in addition to ribbons using these commands on the default mostly-ribbon display. How do I get the protein mostly in ribbons with a few residues in stick or ball & stick? While I haven't worked through the entire tutorials referenced in today's mail, the examples of repr shown early on do not do this; they start from a display of all the protein's atoms.
>  
> Thanks!
> Irene Newhouse





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