[Chimera-users] question about ViewDock

[Elaine Meng]

Hi Miriam,
You can use the command "matrixcopy" to apply the rotation/translation  
of the second receptor model to the corresponding ligands.  For  
example, if the second receptor is model 3 and the ligands that go  
with it are in model 4, try:

matrixcopy 3 4

<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matrixcopy.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 11, 2010, at 9:23 PM, Miriam Gochin wrote:

> I have a question about ViewDock.   It works fine for one receptor  
> and several ligands, but if I open a second receptor model and  
> rotate it, then ligands I open with ViewDock for the second receptor  
> are in the original (unrotated) position.  Is there a way to correct  
> the ligand positions for the current rotation?