[Chimera-users] matching peptides with altenate locations

[Elaine Meng]

Hi Sumitro,
Would it be possible to mail me the two structures so I can try some  
things and get back to you later?  I would keep them private and  
remove them after testing.
Thanks,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Dec 14, 2009, at 11:23 AM, Sumitro Harjanto wrote:

> Hi,
>
> I would like to match two peptides; one with alternate conformations  
> in residue 4 and 5. I have tried:
>
> match   #0:1-9.c at ca   #1:1-9.c at ca.a
>
> match   #0:1-5.c at ca   #1:1-3.c at ca   |   #1:4-5.c at ca.a
>
> but both don’t work and give me the “unequal number of atom chosen”  
> error message.
>
> I tried changing match to sel in the latter case and I can get 10  
> atoms; 5 from each model, which is what I intended.
>
> How should I deal with this?
>
> Thanks,
> Sumitro