[Chimera-users] Curves+ output files

David Chenoweth dcheno at MIT.EDU
Thu Dec 10 06:44:30 PST 2009


Hi!

I have been using a program called Curves for analyzing nucleic acid  
crystal structures for quite a while and I have always used Chimera to  
visualize the output pdb. One file shows the backbone splines and the  
vectors defining the nucleic acid groove widths (r+bdna_b.pdb) and the  
other file shows the nucleic acid helical axis (r+bdna_X.pdb). Chimera  
has always been able to read both of these files until the recent  
production release where it is no longer able to read the r+bdna_b.pdb  
file. I have attached the two files and the actual DNA pdb file. Can  
you please help me fix the problem with reading the r+bdna_b.pdb file  
in the new production release?

Thanks,
Dave
--------------------------------------------------------
David Chenoweth
NIH Postdoctoral Fellow
Swager Research Group
Massachusetts Institute of Technology
Chemistry Department, 18-053
77 Massachusetts Avenue
Cambridge, MA 02139

Email: dcheno at mit.edu
Lab Phone: 617-258-6537
--------------------------------------------------------



-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: r+bdna_X.pdb
Type: chemical/x-pdb
Size: 1668 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment.bin>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: r+bdna_b.pdb
Type: chemical/x-pdb
Size: 17460 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment-0001.bin>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment-0002.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: 1bna.pdb
Type: chemical/x-pdb
Size: 39528 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment-0002.bin>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20091210/d27dbfea/attachment-0003.html>


More information about the Chimera-users mailing list