[Chimera-users] Image not appearing

MIKALS,KYLE A kmikals at ufl.edu
Thu Aug 27 07:58:49 PDT 2009


I made a code to make movie and two of the molecules are not 
appearing in the saved output images.  I put in the code where to 
save them so if something went wrong.

This is the code I made and models 18 and 14 display in the window 
while the code is running, but not in the saved images.  I have no 
idea what is going wrong.  Any ideas?  Here is my code below.

# start capturing frames, in .png format
movie record fformat png raytrace true directory 
/msg/users/kmikals/Chimera_Files
#Created Label saying AAV Capsid Assembly

2dlabels create lab1 text 'AAV Capsid Assembly' color khaki size 
28 xpos .2 ypos .94 visibility show

scale 1.008 50

#Starts action once previous command is complete

wait

modeldisplay#0
wait 5

turn y -1 35

wait 30

modeldisplay#17
turn y -.6 20


wait 30

modeldisplay#18
wait 30

turn y +1.4 35

wait 30

modeldisplay#3
~modeldisplay#0
~modeldisplay#17
~modeldisplay#18

wait 30

scale 0.992 50

wait 15

turn y -1 65

wait 9

modeldisplay#4

wait 9

turn y -1 35

modeldisplay#5

wait 9

turn y -1 65

modeldisplay#10

wait 9

modeldisplay#9

wait 9

turn y -1 65

modeldisplay#14

wait 9

modeldisplay#11

wait 9

turn y -0.5 30

modeldisplay#12

wait 9

turn y -1 65

modeldisplay#13

wait 9

modeldisplay#6
turn y -1 65

wait 9

modeldisplay#7

wait 9

modeldisplay#8

2dlabels delete lab1

#hide_all_molecules

~modeldisplay#3

~modeldisplay#4

~modeldisplay#5

~modeldisplay#6

~modeldisplay#7

~modeldisplay#8

~modeldisplay#9

~modeldisplay#10

~modeldisplay#11

~modeldisplay#12

~modeldisplay#13

~modeldisplay#14
wait 20

scale 0.987

modeldisplay#16
turn y -.3 20
wait
turn x -.75 35
wait 30
turn x .75 35
wait 30
turn x -.38 35
wait
turn y -1 35
wait 30
turn y 2 180
wait
turn x 2 180
wait
# stop recording frames
movie stop
# write status information to reply log
movie status
# encode a movie in mp4 format from recorded frames
movie encode mformat mp4 output /msg/users/kmikals/Chimera_Files



--
MIKALS,KYLE A
Biochemistry
University of Florida




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