[Chimera-users] forget previous error

[Jean Didier Pie Marechal]

Sorry, I made a mistake and found my problem.

All the best
JD

Dr. Jean-Didier Maréchal
Lecturer
Computational Bioorganic and Bioionorganic Chemistry @ Transmet
Unitat de Química Física
Departament de Química
Universitat Autònoma de Barcelona
Edifici C.n.
08193 Cerdanyola (Barcelona)
Tel: +34.935814936
e-mail: JeanDidier.Marechal at uab.es

----- Missatge original -----
De: chimera-users-request at cgl.ucsf.edu
Data: Divendres, Octubre 24, 2008 9:00 pm
Assumpte: Chimera-users Digest, Vol 66, Issue 22

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> Today's Topics:
> 
>   1. volume planes display loop (Benoit Zuber)
>   2. Re: volume planes display loop (Tom Goddard)
> 
> 
> --------------------------------------------------------------------
> --
> 
> Message: 1
> Date: Fri, 24 Oct 2008 16:36:42 +0100
> From: Benoit Zuber <bzuber at mrc-lmb.cam.ac.uk>
> Subject: [Chimera-users] volume planes display loop
> To: chimera users list <chimera-users at cgl.ucsf.edu>
> Message-ID: <4901EB8A.9040102 at mrc-lmb.cam.ac.uk>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hi,
> 
> I have got some questions regarding plane display of volumes:
> Is there a way to cycle through a limited range of planes? For 
> example 
> if the thickness of my volume is 300, is it possible to cycle from 
> z = 
> 100 to z = 120, instead of from z = 0 to z = 299?
> 
> Is there a way to make the cycling through the planes start in the 
> other 
> direction than when it stopped last time? For example, I click stop 
> while the display is cycling from low z value to high z value. If I 
> then 
> click start, the display is going to cycle again from low to high z 
> value but I would like it to cycle from high to low z value.
> 
> Is it possible to specify a starting plane and an end plane, and to 
> have 
> the display going from the starting plane to the end plane only 
> once 
> (without cycling)?
> 
> Finally, can all of this be specified through the command line?
> 
> Cheers,
> Ben
> 
> 
> Beno?t Zuber
> MRC Laboratory of Molecular Biology
> Hills Road
> Cambridge
> CB2 0QH
> United Kingdom
> +44 1223 402209
> bzuber at mrc-lmb.cam.ac.uk
> 
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Fri, 24 Oct 2008 10:31:44 -0700
> From: Tom Goddard <goddard at cgl.ucsf.edu>
> Subject: Re: [Chimera-users] volume planes display loop
> To: Benoit Zuber <bzuber at mrc-lmb.cam.ac.uk>
> Cc: chimera users list <chimera-users at cgl.ucsf.edu>
> Message-ID: <49020680.2070802 at cgl.ucsf.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hi Ben,
> 
>  The current Chimera daily builds have a more flexible volume 
> plane 
> cycling interface.  In the planes panel it now has a switch
> 
>  Cycle through [20] planes at speed [30]
> 
> It lets you play through a specified number of planes centered on 
> the 
> currently shown plane.  You start it by clicking a switch and stop 
> it 
> the same way.  There is no control to stop after N planes, and the 
> initial direction of play is the same as when you last stopped 
> playback.
>  There is currently no Chimera command equivalent which would 
> obviously 
> be handy for making movies.  I've attached a Python script which 
> can be 
> used with Chimera commands (example given in script) to control 
> exactly 
> which frames to show in a movie.  Note that the frame rate is only 
> relevant for real-time cycling in Chimera.  Movie recording 
> captures 
> every new frame no matter how slow they are rendered and plays in a 
> movie player at 25 frames per second (adjustable with a movie 
> encode 
> command option).  Chimera movie recording capabilities are very 
> limited 
> now but it is an area we intend to improve.
> 
>    Tom
> 
> 
> Benoit Zuber wrote:
> > Hi,
> >
> > I have got some questions regarding plane display of volumes:
> > Is there a way to cycle through a limited range of planes? For 
> example 
> > if the thickness of my volume is 300, is it possible to cycle 
> from z = 
> > 100 to z = 120, instead of from z = 0 to z = 299?
> >
> > Is there a way to make the cycling through the planes start in 
> the other 
> > direction than when it stopped last time? For example, I click 
> stop 
> > while the display is cycling from low z value to high z value. If 
> I then 
> > click start, the display is going to cycle again from low to high 
> z 
> > value but I would like it to cycle from high to low z value.
> >
> > Is it possible to specify a starting plane and an end plane, and 
> to have 
> > the display going from the starting plane to the end plane only 
> once 
> > (without cycling)?
> >
> > Finally, can all of this be specified through the command line?
> >
> > Cheers,
> > Ben
> >
> >
> > Beno?t Zuber
> > MRC Laboratory of Molecular Biology
> > Hills Road
> > Cambridge
> > CB2 0QH
> > United Kingdom
> > +44 1223 402209
> > bzuber at mrc-lmb.cam.ac.uk
> >
> > _______________________________________________
> > Chimera-users mailing list
> > Chimera-users at cgl.ucsf.edu
> > http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
> >   
> 
> 
> 
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> End of Chimera-users Digest, Vol 66, Issue 22
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>