[Chimera-users] Contact mapping

[Eric Pettersen]

On Oct 16, 2008, at 10:31 AM, Beale, John wrote:

> Is there a way in Chimera to generate interresidue contact maps for  
> proteins from MD data?

No, sorry.  The closest you can get I think is to run findclash every  
frame and write out a list of contacts, which doesn't seem very good.   
VMD has a plugin that does exactly what you're asking for though:
Contact Map Plugin, Version 1.1

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20081016/a97c9bc9/attachment.html>