[Chimera-users] Fwd: Aligning two residues same name

[Francesco Pietra]

Changing residue name works. Deleted membrane, saved pdb without membrane.
Loaded the two models. Command line: match :XXX :YYY

How to put the difference in quantitative terms (rmsd)?
Thanks
francesco



--- Francesco Pietra <chiendarret at yahoo.com> wrote:

> Date: Mon, 4 Feb 2008 06:59:25 -0800 (PST)
> From: Francesco Pietra <chiendarret at yahoo.com>
> Subject: Aligning two residues same name
> To: chimera <chimera-users at cgl.ucsf.edu>
> 
> Task: compare/align a single-residue molecule before docking (naked molecule,
> mol2 or pdb file) with same residue as ligand in a protein after docking/MD
> (pdb file of a snapshot for complex embedded in a bilayer membrane). Should I
> change the residue name in one of the two models? Same name poses to me
> problems. Or there is a direct way?
> Thanks
> francesco pietra
> 
> 
>      
>
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