[Chimera-users] Fitting multiple pdb models

[Sabuj Pattanayek]

> Hi Lasanthi,
> 
>   The fit optimization is very simplistic and does not currently avoid 
> clashes between neighboring molecules.

 >> This is to get a clarification: I need to fit 6 independent pdb models
 >> that account for different domains of the protein into my EM map. How
 >> can I do this? And, is there an evaluation criterion for the fitting?

Take a look at colores in the situs package:

http://situs.biomachina.org/

HTH,
Sabuj