[Chimera-users] Chimera vs Amber, which one digresses from the average pdb rules?

[Elaine Meng]

Hi Francesco,
Yes, I saw the lines in your mail and have reported the hydrogen name  
issue as a bug.  We intend to completely follow the PDB format.   
However, fixing the hydrogen naming will not affect the issues you  
were having with HETATM/TER and names like 5C13, because those are  
already handled correctly by Chimera (according to the PDB format  
standard).

Format issues are not limited to Chimera users, of course, but anyone  
who works with multiple programs!
Elaine
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Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html