[Chimera-users] Little help to write a python script

[Tom Goddard]

Hi Eduardo,

  You are right you need a Python script -- there is no command to set 
density map threshold levels.  I've attached a script to make map 
images.  I threw in a bunch of optional lines to add color, smoothing, 
white background, ..., that you can just precede with a "#" character if 
you do not want them.

  There is also a much more complicated script for making images of maps 
that is used for the Virus Particle Explorer web site, producing for 
example:

    http://mmtsb1.scripps.edu/emdb/em_info_page.php?vipPDB=em_1115

You can get that script from the Chimera experimental features web 
page.  Look for Virus EM Map Images:

    http://www.cgl.ucsf.edu/chimera/experimental/experimental.html

  I will be on vacation until June 6 - 27.  Others on the chimera-users 
list may be able to help you if you have further script questions.

    Tom


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