[Chimera-users] saving map in different position

Elaine Meng meng at cgl.ucsf.edu
Fri Feb 16 07:44:42 PST 2007


Hi Gabor,
The "matrixget" command writes the current transformation matrix for 
each model to a file:
http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matrixset.html

The matrices for all open models are written to a single file, and they 
describe the absolute transformations (there is no option to write the 
transformation of one model relative to another).
I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html


On Feb 16, 2007, at 6:23 AM, Gabor Papai wrote:

> Hi Tom,
> Is there a way to save a map with only transformation, or obtain the
> transformation matrix if I do a freehand transformation of an object?
> We would like to create a composite volume of several spheres. It would
> be the best to write a single map of several differently positioned
> spheres but I could also apply the transformation in IMAGIC if I would
> know the matrix.
> Thanks for helping!
> Regards,
> Gabor
>
> -- 
> Gabor Papai
> IGBMC
> Department of Structural Biology and Genomics
> 1, rue Laurent Fries, BP 10142
> 67404 Illkirch, France
> phone  +33-3-90244796
> Fax +33-3-88653201
> E-mail: papai at igbmc.u-strasbg.fr
>
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