[Chimera-users] printing "zone" search

[Francesco Pietra]

I am looking at the protein residues "responsible" for docking a single-residue
ligand.

select protein & :ligandname z<#

works for various values of #. I would like to print the list of residues
instead of having to detect them from the screen, which may lead to errors.

Also, which section of the manual concerns RMSD? (I would like to calculate
RMSD at various stages of DOCK6.1 and Amber9 MD for the above, i..e. how the
ligand adapts and the protein follows it, or vice-versa).

Thanks

francesco pietra


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