[Chimera-users] Fitting informations

Thomas Goddard goddard at cgl.ucsf.edu
Tue Aug 21 09:46:06 PDT 2007


Hi Magali,

   The Chimera "fit model in map" does a real-space local optimization. 
  It applies rigid rotations and translations to maximize the average 
map value at the atom positions.  It uses gradient descent.

   Here is info on how to use it and reference documentation:

http://www.cgl.ucsf.edu/chimera/tutorials/volumetour/volumetour.html#fitmodel
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/fitmodels/fitmodels.html

    Tom



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