[chimera-dev] Fwd: RBVI web update results

Eric Pettersen pett at cgl.ucsf.edu
Wed Feb 22 08:56:49 PST 2023


For whoever is responsible for the "createPub" script...

> Begin forwarded message:
> 
> From: root <root at cgl.ucsf.EDU>
> Subject: RBVI web update results
> Date: February 22, 2023 at 4:04:54 AM PST
> To: pett at cgl.ucsf.edu
> 
> Traceback (most recent call last):
>  File "/usr/local/bin/createPub", line 188, in <module>
>    main()
>  File "/usr/local/bin/createPub", line 46, in main
>    htmlList = formatIds(idList, url)
>  File "/usr/local/bin/createPub", line 99, in formatIds
>    output.extend(bufferPid(url, idBuffer, flush=True))
>  File "/usr/local/bin/createPub", line 109, in bufferPid
>    data = formatPubmedId(idBuffer, url)
>  File "/usr/local/bin/createPub", line 124, in formatPubmedId
>    esr = eSummaryResult.eSummaryResult(data)
>  File "/usr/local/lib/python2.7/site-packages/ncbi_eutils/eSummaryResult.py", line 43, in __init__
>    raise ExpatError
> xml.parsers.expat.ExpatError

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