[chimera-dev] Get Molecule Index in Model Panel

[Pablo Solar Rodríguez]

Wow, so easy! Thank you so much!!

El vie., 28 feb. 2020 a las 1:35, Eric Pettersen (<pett at cgl.ucsf.edu>)
escribió:

> Hi Pablo,
> The “model IDs” aren't even necessarily integers, for instance the model
> ID of the first member of an NMR ensemble is 0.1 .  The easiest way to get
> the atom spec you are trying to generate is to call *str()* on the
> model.  For instance if *m* is a variable holding model 0, then *str(m)* returns
> “#0”.  So your *indexes.append()* call becomes:
>
> *indexes.append(str(molecule))*
>
> and you don’t even need to use *enumerate()*.
>
> —Eric
>
> Eric Pettersen
> UCSF Computer Graphics Lab
>
>
>
> On Feb 27, 2020, at 4:27 AM, Pablo Solar Rodríguez <pablosolar.r at gmail.com>
> wrote:
>
> Hello all,
>
> Optimizing my plugin, I need to hide atoms and show ribbons for some
> opened Molecules.
>
> What I am trying is to loop over opened molecules in the ModelPanel and,
> If the Molecule matches a specific tag, save its index in a indexes list.
> Then, hide atoms and show ribbons by makeCommand with the indexes:
>
> *def adjust_visualization(self, final_pdbs):*
>
>
>
>
>
> *    """    Adjust atoms and ribbons visualization for FitOpt final
> solutions    """    indexes = []    chimera.openModels.add(final_pdbs)
> molecule_list = om.list(modelTypes=[Molecule])*
>
> *    for index, molecule in enumerate(molecule_list):*
>
> *        if self.fitopt_tag in molecule.name <http://molecule.name/>:
>       indexes.append('#' + str(index))*
>
>
> *    makeCommand(' '.join(['~show', ' '.join(indexes)]))    makeCommand('
> '.join(['ribbon', ' '.join(indexes)]))*
>
> It seems that the index from enumerate is not corresponding to the index
> in the ModelPanel so how could I get the proper molecule index??
>
> Thank you all in advance!
>
> Regards!!
>
>
> *Pablo Solar Rodríguez*
>
>
> _______________________________________________
> Chimera-dev mailing list
> Chimera-dev at cgl.ucsf.edu
> http://www.rbvi.ucsf.edu/mailman/listinfo/chimera-dev
>
>
>

-- 

*Pablo Solar Rodríguez*

*pablosolar.r at gmail.com <pablosolar.r at gmail.com>*
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-dev/attachments/20200228/aac38998/attachment-0001.html>