[chimera-dev] Programmer's reference

Tom Goddard goddard at cgl.ucsf.edu
Fri Jul 24 22:10:14 PDT 2009


Hi JD,

  I believe we no longer provide the programmer's reference guide.  It 
was automatically generated from source code comments using HappyDoc.  
It's quality was so poor we stopped generating it.

    Tom

-------- Original Message --------
Subject: [chimera-dev] Programmer's reference
From: Jean Didier Pie Marechal
To: chimera-dev at cgl.ucsf.edu
Date: 7/24/09 2:34 AM
> Dear All,
>
> It seems that we have a problem in getting to the programmer's reference. Is there something wrong with the server? 
>
> All the best,
> JD
>
> Dr. Jean-Didier Maréchal
> Lecturer
> Computational Biotechnological Chemistry @ Transmet
> Unitat de Química Física
> Departament de Química
> Universitat Autònoma de Barcelona
> Edifici C.n.
> 08193 Cerdanyola (Barcelona)
> Tel: +34.935814936
> e-mail: JeanDidier.Marechal at uab.es
>
> ----- Missatge original -----
> De: chimera-dev-request at cgl.ucsf.edu
> Data: Dimecres, Juliol 22, 2009 9:00 pm
> Assumpte: Chimera-dev Digest, Vol 66, Issue 7
>
>   
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>> Today's Topics:
>>
>>   1. small suggestion regarding savepos (Jean Didier Pie Marechal)
>>   2. Re: small suggestion regarding savepos (Eric Pettersen)
>>
>>
>> --------------------------------------------------------------------
>> --
>>
>> Message: 1
>> Date: Wed, 22 Jul 2009 13:20:56 +0200
>> From: Jean Didier Pie Marechal <JeanDidier.Marechal at uab.cat>
>> Subject: [chimera-dev] small suggestion regarding savepos
>> To: chimera-dev at cgl.ucsf.edu
>> Message-ID: <3a0ecec54f4c.4a671238 at uab.es>
>> Content-Type: text/plain; charset=iso-8859-1
>>
>> Dear all,
>>
>> I see that when I close a session, the savepos list continues 
>> containing the poses I defined for my anterior session. May be that 
>> is something you want to have this way, but I was wondering if the 
>> savepos (with an option for example) could list only the poses for 
>> the working session.
>>
>> All the best,
>> JD
>>
>>
>>
>>
>> Dr. Jean-Didier Mar?chal
>> Lecturer
>> Computational Biotechnological Chemistry @ Transmet
>> Unitat de Qu?mica F?sica
>> Departament de Qu?mica
>> Universitat Aut?noma de Barcelona
>> Edifici C.n.
>> 08193 Cerdanyola (Barcelona)
>> Tel: +34.935814936
>> e-mail: JeanDidier.Marechal at uab.es
>>
>>
>>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Wed, 22 Jul 2009 11:43:20 -0700
>> From: Eric Pettersen <pett at cgl.ucsf.edu>
>> Subject: Re: [chimera-dev] small suggestion regarding savepos
>> To: JeanDidier.Marechal at uab.es
>> Cc: chimera-dev at cgl.ucsf.edu, Chimera BB <chimera-users at cgl.ucsf.edu>
>> Message-ID: <D600289F-8E55-4765-96AB-F2F4E264138C at cgl.ucsf.edu>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Hi JD,
>> 	I think you're right:  closing a session should clear saved  
>> positions.  In tomorrow's build that's what will happen.
>>
>> --Eric
>>
>>                         Eric Pettersen
>>                         UCSF Computer Graphics Lab
>>                         http://www.cgl.ucsf.edu
>>
>>
>> On Jul 22, 2009, at 4:20 AM, Jean Didier Pie Marechal wrote:
>>
>>     
>>> Dear all,
>>>
>>> I see that when I close a session, the savepos list continues  
>>> containing the poses I defined for my anterior session. May be 
>>>       
>> that  
>>     
>>> is something you want to have this way, but I was wondering if 
>>>       
>> the  
>>     
>>> savepos (with an option for example) could list only the poses 
>>>       
>> for  
>>     
>>> the working session.
>>>
>>> All the best,
>>> JD
>>>
>>>
>>>
>>>
>>> Dr. Jean-Didier Mar?chal
>>> Lecturer
>>> Computational Biotechnological Chemistry @ Transmet
>>> Unitat de Qu?mica F?sica
>>> Departament de Qu?mica
>>> Universitat Aut?noma de Barcelona
>>> Edifici C.n.
>>> 08193 Cerdanyola (Barcelona)
>>> Tel: +34.935814936
>>> e-mail: JeanDidier.Marechal at uab.es
>>>
>>>
>>>
>>> _______________________________________________
>>> Chimera-dev mailing list
>>> Chimera-dev at cgl.ucsf.edu
>>> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-dev
>>>       
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>>     
>
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