[chimera-dev] Crash running Chimera benchmark

David E. Konerding dekonerding at lbl.gov
Mon Oct 2 13:44:26 PDT 2006 

Hi,

I get a seg fault when running the Chimera benchmark on my new machine 
(too bad-- it was coming up with some decent numbers).

Here is the backtrace:
#0  0xf7dc908d in memmove () from /lib/libc.so.6
#1  0xf582b806 in do_sliced_copy (dest=0xeeb53000 <Address 0xeeb53000 
out of bounds>, dest_strides=0x8692b44, dest_dimensions=0x8208d94, 
dest_nd=-431252312, src=0x8699358 "",
    src_strides=0x0, src_dimensions=0x0, src_nd=0, elsize=4, copies=4) 
at Src/arrayobject.c:70
#2  0xf582b894 in do_sliced_copy (dest=0xeeb52ff8 "", 
dest_strides=0x8692b40, dest_dimensions=0x8208d90, dest_nd=-431252312, 
src=0x8699358 "", src_strides=0x0, src_dimensions=0x0,
    src_nd=0, elsize=4, copies=4) at Src/arrayobject.c:78
#3  0xf582b894 in do_sliced_copy (dest=0xeeb50888 "", 
dest_strides=0x8692b3c, dest_dimensions=0x8208d8c, dest_nd=-431252312, 
src=0x8699358 "", src_strides=0x0, src_dimensions=0x0,
    src_nd=0, elsize=4, copies=4) at Src/arrayobject.c:78
#4  0xf582b894 in do_sliced_copy (dest=0xeeac0408 "", 
dest_strides=0x8692b38, dest_dimensions=0x8208d88, dest_nd=-431252312, 
src=0x8699358 "", src_strides=0x0, src_dimensions=0x0,
    src_nd=0, elsize=4, copies=4) at Src/arrayobject.c:78
#5  0xf582bf3f in PyArray_CopyArray (dest=0xf58b87a0, src=0xbaea3008) at 
Src/arrayobject.c:278
#6  0xf582c02e in PyArray_CopyObject (dest=0xf58b87a0, 
src_object=0xf58b89a8) at Src/arrayobject.c:315
#7  0xf5833416 in array_ass_sub (self=0xf58b8778, index=0xf58b87a0, 
op=0x8156f18) at Src/arrayobject.c:1005
#8  0x08058e71 in PyObject_SetItem (o=0xf58b8778, key=0x812dd00, 
value=0x8156f18) at Objects/abstract.c:123
#9  0x080aeb57 in PyEval_EvalFrame (f=0x84bfdcc) at Python/ceval.c:1474
#10 0x080b098e in PyEval_EvalCodeEx (co=0xf5899ca0, globals=0x2, 
locals=0xe64b9ca8, args=0x84bf63c, argcount=2, kws=0x84bf644, kwcount=0, 
defs=0xf59567d8, defcount=2, closure=0x0)
    at Python/ceval.c:2736
#11 0x080b23d2 in fast_function (func=0x2, pp_stack=0xffffa15c, n=2, 
na=-431252312, nk=0) at Python/ceval.c:3651
#12 0x080b1f3f in call_function (pp_stack=0xffffa15c, oparg=-431252312) 
at Python/ceval.c:3579
#13 0x080afebc in PyEval_EvalFrame (f=0x84bf4c4) at Python/ceval.c:2163
#14 0x080b2467 in fast_function (func=0x2, pp_stack=0xffffa2bc, n=1, 
na=-431252312, nk=0) at Python/ceval.c:3640
#15 0x080b1f3f in call_function (pp_stack=0xffffa2bc, oparg=-431252312) 
at Python/ceval.c:3579
#16 0x080afebc in PyEval_EvalFrame (f=0x84bd724) at Python/ceval.c:2163
#17 0x080b2467 in fast_function (func=0x2, pp_stack=0xffffa41c, n=2, 
na=-431252312, nk=0) at Python/ceval.c:3640
#18 0x080b1f3f in call_function (pp_stack=0xffffa41c, oparg=-431252312) 
at Python/ceval.c:3579
#19 0x080afebc in PyEval_EvalFrame (f=0x84b61d4) at Python/ceval.c:2163
#20 0x080b2467 in fast_function (func=0x2, pp_stack=0xffffa57c, n=3, 
na=-431252312, nk=0) at Python/ceval.c:3640
#21 0x080b1f3f in call_function (pp_stack=0xffffa57c, oparg=-431252312) 
at Python/ceval.c:3579
#22 0x080afebc in PyEval_EvalFrame (f=0x863040c) at Python/ceval.c:2163
#23 0x080b2467 in fast_function (func=0x2, pp_stack=0xffffa6dc, n=1, 
na=-431252312, nk=0) at Python/ceval.c:3640
#24 0x080b1f3f in call_function (pp_stack=0xffffa6dc, oparg=-431252312) 
at Python/ceval.c:3579
#25 0x080afebc in PyEval_EvalFrame (f=0x85f95a4) at Python/ceval.c:2163
#26 0x080b098e in PyEval_EvalCodeEx (co=0xf5888f20, globals=0x2, 
locals=0xe64b9ca8, args=0xf595d9f8, argcount=1, kws=0x0, kwcount=0, 
defs=0x0, defcount=0, closure=0x0)
    at Python/ceval.c:2736
#27 0x0810ee8a in function_call (func=0xf588eb1c, arg=0xf595d9ec, 
kw=0x0) at Objects/funcobject.c:548
#28 0x0805c807 in PyObject_Call (func=0x1, arg=0xe64b9ca8, 
kw=0xe64b9ca8) at Objects/abstract.c:1756
#29 0x080644fb in instancemethod_call (func=0xf588eb1c, arg=0xf595d9ec, 
kw=0xe64b9ca8) at Objects/classobject.c:2447
#30 0x0805c807 in PyObject_Call (func=0x1, arg=0xe64b9ca8, 
kw=0xe64b9ca8) at Objects/abstract.c:1756
#31 0x080b1cca in PyEval_CallObjectWithKeywords (func=0xe64b9ca8, 
arg=0xf7d1d02c, kw=0xf5894e64) at Python/ceval.c:3425
#32 0x080a6cc6 in builtin_apply (self=0x0, args=0xe64b9ca8) at 
Python/bltinmodule.c:100
#33 0x0810f4cd in PyCFunction_Call (func=0xf7d25dcc, arg=0x0, kw=0x1) at 
Objects/methodobject.c:108
#34 0x080b225e in call_function (pp_stack=0xffffabdc, oparg=-431252312) 
at Python/ceval.c:3558
#35 0x080afebc in PyEval_EvalFrame (f=0x8330d4c) at Python/ceval.c:2163
#36 0x080b098e in PyEval_EvalCodeEx (co=0xf676c8a0, globals=0x2, 
locals=0xe64b9ca8, args=0xf595dbd8, argcount=1, kws=0x0, kwcount=0, 
defs=0x0, defcount=0, closure=0x0)
    at Python/ceval.c:2736
#37 0x0810ee8a in function_call (func=0xf6713fb4, arg=0xf595dbcc, 
kw=0x0) at Objects/funcobject.c:548
#38 0x0805c807 in PyObject_Call (func=0x1, arg=0xe64b9ca8, 
kw=0xe64b9ca8) at Objects/abstract.c:1756
#39 0x080644fb in instancemethod_call (func=0xf6713fb4, arg=0xf595dbcc, 
kw=0xe64b9ca8) at Objects/classobject.c:2447
#40 0x0805c807 in PyObject_Call (func=0x1, arg=0xe64b9ca8, 
kw=0xe64b9ca8) at Objects/abstract.c:1756
#41 0x080b1cca in PyEval_CallObjectWithKeywords (func=0xe64b9ca8, 
arg=0xf7d1d02c, kw=0xf589d16c) at Python/ceval.c:3425
#42 0xf789a6ca in PythonCmd (clientData=0xf7d1d02c, interp=0x8337ae8, 
argc=1, argv=0xffffafe0) at 
/var/tmp/chimera-build/foreign/src/Python-2.4.2/Modules/_tkinter.c:1998
#43 0xf6bd2caf in TclInvokeStringCommand () from 
/usr/local/chimera/lib/libtcl8.4.so
#44 0xf6bd3d34 in TclEvalObjvInternal () from 
/usr/local/chimera/lib/libtcl8.4.so
#45 0xf6bfb59b in TclExecuteByteCode () from 
/usr/local/chimera/lib/libtcl8.4.so
#46 0xf6bfaa73 in TclCompEvalObj () from /usr/local/chimera/lib/libtcl8.4.so
#47 0xf6bd50a2 in Tcl_EvalObjEx () from /usr/local/chimera/lib/libtcl8.4.so
#48 0xf6ca5d01 in TkInvokeButton () from /usr/local/chimera/lib/libtk8.4.so
#49 0xf6ca4efa in ButtonWidgetObjCmd () from 
/usr/local/chimera/lib/libtk8.4.so
#50 0xf6bd3d34 in TclEvalObjvInternal () from 
/usr/local/chimera/lib/libtcl8.4.so
#51 0xf6bd40b4 in Tcl_EvalObjv () from /usr/local/chimera/lib/libtcl8.4.so
#52 0xf6bd4fdc in Tcl_EvalObjEx () from /usr/local/chimera/lib/libtcl8.4.so
#53 0xf6c2dcca in Tcl_UplevelObjCmd () from 
/usr/local/chimera/lib/libtcl8.4.so
#54 0xf6bd3d34 in TclEvalObjvInternal () from 
/usr/local/chimera/lib/libtcl8.4.so
#55 0xf6bfb59b in TclExecuteByteCode () from 
/usr/local/chimera/lib/libtcl8.4.so
#56 0xf6bfaa73 in TclCompEvalObj () from /usr/local/chimera/lib/libtcl8.4.so
#57 0xf6c2e3a7 in TclObjInterpProc () from 
/usr/local/chimera/lib/libtcl8.4.so
#58 0xf6bd3d34 in TclEvalObjvInternal () from 
/usr/local/chimera/lib/libtcl8.4.so
#59 0xf6bd4904 in Tcl_EvalEx () from /usr/local/chimera/lib/libtcl8.4.so
#60 0xf6bd4dab in Tcl_Eval () from /usr/local/chimera/lib/libtcl8.4.so
#61 0xf6bd6666 in Tcl_GlobalEval () from /usr/local/chimera/lib/libtcl8.4.so
#62 0xf6c7934b in Tk_BindEvent () from /usr/local/chimera/lib/libtk8.4.so
#63 0xf6c7f245 in TkBindEventProc () from /usr/local/chimera/lib/libtk8.4.so
#64 0xf6c86d41 in Tk_HandleEvent () from /usr/local/chimera/lib/libtk8.4.so
#65 0xf6c875f6 in WindowEventProc () from /usr/local/chimera/lib/libtk8.4.so
#66 0xf6c23408 in Tcl_ServiceEvent () from 
/usr/local/chimera/lib/libtcl8.4.so
#67 0xf6c236b6 in Tcl_DoOneEvent () from /usr/local/chimera/lib/libtcl8.4.so
#68 0xf7898b24 in Tkapp_MainLoop (_self=0xf6b003a0, args=0xe64b9ca8) at 
/var/tmp/chimera-build/foreign/src/Python-2.4.2/Modules/_tkinter.c:2536
#69 0x0810f4cd in PyCFunction_Call (func=0xf5a1b2cc, arg=0xf6b003a0, 
kw=0x1) at Objects/methodobject.c:108
#70 0x080b225e in call_function (pp_stack=0xffffc4fc, oparg=-431252312) 
at Python/ceval.c:3558
#71 0x080afebc in PyEval_EvalFrame (f=0x8337914) at Python/ceval.c:2163
#72 0x080b098e in PyEval_EvalCodeEx (co=0xf6ddc1e0, globals=0x2, 
locals=0xe64b9ca8, args=0x833e1f4, argcount=1, kws=0x833e1f8, kwcount=0, 
defs=0xf6d5e6f8, defcount=1, closure=0x0)
    at Python/ceval.c:2736
#73 0x080b23d2 in fast_function (func=0x2, pp_stack=0xffffc6cc, n=1, 
na=-431252312, nk=0) at Python/ceval.c:3651
#74 0x080b1f3f in call_function (pp_stack=0xffffc6cc, oparg=-431252312) 
at Python/ceval.c:3579
#75 0x080afebc in PyEval_EvalFrame (f=0x833e0a4) at Python/ceval.c:2163
#76 0x080b2467 in fast_function (func=0x2, pp_stack=0xffffc82c, n=0, 
na=-431252312, nk=0) at Python/ceval.c:3640
#77 0x080b1f3f in call_function (pp_stack=0xffffc82c, oparg=-431252312) 
at Python/ceval.c:3579
#78 0x080afebc in PyEval_EvalFrame (f=0x818cf34) at Python/ceval.c:2163
#79 0x080b098e in PyEval_EvalCodeEx (co=0xf7ce09a0, globals=0x2, 
locals=0xe64b9ca8, args=0x818a5a4, argcount=1, kws=0x818a5a8, kwcount=0, 
defs=0xf7d5b8a8, defcount=12, closure=0x0)
    at Python/ceval.c:2736
#80 0x080b23d2 in fast_function (func=0x2, pp_stack=0xffffc9fc, n=1, 
na=-431252312, nk=0) at Python/ceval.c:3651
#81 0x080b1f3f in call_function (pp_stack=0xffffc9fc, oparg=-431252312) 
at Python/ceval.c:3579
#82 0x080afebc in PyEval_EvalFrame (f=0x818a454) at Python/ceval.c:2163
#83 0x080b098e in PyEval_EvalCodeEx (co=0xf7ce0620, globals=0x2, 
locals=0xe64b9ca8, args=0x0, argcount=0, kws=0x0, kwcount=0, defs=0x0, 
defcount=0, closure=0x0)
    at Python/ceval.c:2736
#84 0x080adc17 in PyEval_EvalCode (co=0xe64b9ca8, globals=0xe64b9ca8, 
locals=0xe64b9ca8) at Python/ceval.c:484
#85 0x080e4339 in run_node (n=0xf7d35824, filename=0xe64b9ca8 "", 
globals=0xe64b9ca8, locals=0xe64b9ca8, flags=0xe64b9ca8) at 
Python/pythonrun.c:1265
#86 0x080e3744 in PyRun_SimpleFileExFlags (fp=0x8153008, 
filename=0xffffd479 "/usr/local/chimera/share/__main__.py", closeit=1, 
flags=0xffffcbc4) at Python/pythonrun.c:860
#87 0x080e30fa in PyRun_AnyFileExFlags (fp=0x8153008, 
filename=0xffffd479 "/usr/local/chimera/share/__main__.py", closeit=1, 
flags=0xffffcbc4) at Python/pythonrun.c:664
#88 0x080559c6 in Py_Main (argc=1, argv=0xffffcc84) at Modules/main.c:484
#89 0x080553a9 in main (argc=-431252312, argv=0xe64b9ca8) at 
Modules/python.c:23
(gdb) quit

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