[chimera-dev] DelPhi in Chimera

Thomas Goddard goddard at cgl.ucsf.EDU
Mon Dec 9 10:40:39 PST 2002


Hi Wade,

  If the problem showing the DelPhi file in Chimera is that the file
is large you can try giving Chimera more memory.  If you are on unix
you can use the limit command in a csh shell to see the current limits
and to increase the data size limit:

  % limit
  cputime 	unlimited
  filesize 	unlimited
  datasize 	131072 kbytes
  stacksize 	8515 kbytes
  coredumpsize 	0 kbytes
  memoryuse 	4092680 kbytes
  descriptors 	4096 files
  addressspace 	4194304 kbytes

  % limit datasize 512M

  % limit
  cputime 	unlimited
  filesize 	unlimited
  datasize 	524288 kbytes
  stacksize 	8515 kbytes
  coredumpsize 	0 kbytes
  memoryuse 	4092680 kbytes
  descriptors 	4096 files
  addressspace 	4194304 kbytes

You then need to restart Chimera in that shell where you increased the
memory limit.

In linux in a bash shell you can use "ulimit -a" to show the limits,
and "ulimit -d 500000" to set the limit to 500,000 kbytes = 500 Mbytes.

    Tom



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