Tom Goddard, Andrew Ling
Updated October 22, 2012
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| Microtubule symmetry. | Helix symmetry. | Cage builder. | Measure domain rotation. |
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| Virus crystal contacts. | Find surface residues. | Virus capsid display. |
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| Local correlation. | Map time series. |
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| Spherical clipping. | Report map positions. | Icosahedral wedge. | Unroll cylinder. |
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| Show icosahedral cage. | Map values at atom positions. | Cavity volume. | Oblique slicing. |
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| Measure distances between surfaces. | Measure filament diameter. | Virus shell distance measurement. | Measuring length of segmented bacteria. |
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| Mask to traced surface. | Smooth mask boundary. |
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| MultiFit asymmetric fitting. | MultiFit cyclic symmetry. | Sequential fitting. | Symmetric fitting. |
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| Global fitting. | Global and symmetric fitting. | Rous sarcoma virus tutorial. | Slice images of segmented objects. |
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| Extract rotated box. | Placing markers on vesicles in a density. | Segmenting a density map and fitting a molecule. | Segmenting a density map using the mouse. |
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| Building a homology model. |
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| Smooth transition between two scenes. | Fly-through animation. |
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| Aligning and morphing two maps. | Morphing between two density maps. | How to align two protein chains and morph one into another.
Download video (Quicktime format, 218 Mb). |
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| Inspecting electrostatic potential values. | How to view electrostatic potential and standard residue charges.
Download video (Quicktime format, 87 Mb). |
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| How to fit a tubulin monomer into a microtubule map. Download video (Quicktime format, 112 Mbytes). | Fitting a second copy of tubulin. Download video (Quicktime format, 62 Mbytes). | Checking the correlation coefficient. Download video (Quicktime format, 57 Mbytes). |
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Part 1:
How to use the Chimera HHMI Virus Viewer. | Part 2: Finding virus models on the web. | Part 3: Exploring a virus in atomic detail. |