Structure-Fun...ights reserved.\n </p>\n </body></html>', global family_view = <function family_view>, ID = '70', form = FieldStorage(None, None, [MiniFieldStorage('view...), MiniFieldStorage('submit', 'reformat table')]) /mol/sfld/www/public/cgi-bin/SFLDvm.py in family_view(ID='70', form=FieldStorage(None, None, [MiniFieldStorage('view...), MiniFieldStorage('submit', 'reformat table')])) 1833 # fields to the preferences file. 1834 if form.has_key('set_prefs'): 1835 po = open('../datadocs/data/prefs/%s' % user, 'w') 1836 for x in table_prefs: 1837 po.write('%s\n' % x) po undefined, builtin open = <type 'file'>, user undefined UnboundLocalError: local variable 'user' referenced before assignment args = ("local variable 'user' referenced before assignment",) From jir322 at gmail.com Sat Mar 20 13:27:22 2010 From: jir322 at gmail.com (John Irwin) Date: Sat, 20 Mar 2010 13:27:22 -0700 Subject: [sfld-help] more comments on sfld Message-ID: <a8d66bb11003201327m1c43d7d0v140bcc4ac1f2fd6e@mail.gmail.com> http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=structs&type=xray&level=family&id=56 page is blank #2 On this page http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=structs&type=xray&level=subgroup&id=158 there are family and functional domain annotations yet on the previous page http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=superfamily&id=4 familes is empty. Is this correct? thanks

From jir322 at gmail.com Sat Mar 20 13:23:43 2010 From: jir322 at gmail.com (John Irwin) Date: Sat, 20 Mar 2010 13:23:43 -0700 Subject: [sfld-help] thanks for the presentation today Message-ID: clicking on "Set current value as my default" (presumably cookie?) on http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=family&id=70 gets UnboundLocalError Python 2.4.4: /mol/sfld/www/public/cgi-bin/ Sat Mar 20 13:23:32 2010 A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred. /mol/sfld/www/public/cgi-bin/SFLDvm.py 4198 4199 #profile_this() 4200 vm() 4201 4202 vm = /mol/sfld/www/public/cgi-bin/SFLDvm.py in vm() 328 html = HTML_Maker.error_page("Error: Family view request without ID") 329 else: 330 html = family_view(ID, form) 331 else: html = HTML_Maker.error_page("Error: Family view request without ID") 332 html = '\n \n Structure-Fun...ights reserved.\n </p>\n </body></html>', global family_view = <function family_view>, ID = '70', form = FieldStorage(None, None, [MiniFieldStorage('view...), MiniFieldStorage('submit', 'reformat table')]) /mol/sfld/www/public/cgi-bin/SFLDvm.py in family_view(ID='70', form=FieldStorage(None, None, [MiniFieldStorage('view...), MiniFieldStorage('submit', 'reformat table')])) 1833 # fields to the preferences file. 1834 if form.has_key('set_prefs'): 1835 po = open('../datadocs/data/prefs/%s' % user, 'w') 1836 for x in table_prefs: 1837 po.write('%s\n' % x) po undefined, builtin open = <type 'file'>, user undefined UnboundLocalError: local variable 'user' referenced before assignment args = ("local variable 'user' referenced before assignment",) From jir322 at gmail.com Sat Mar 20 13:27:22 2010 From: jir322 at gmail.com (John Irwin) Date: Sat, 20 Mar 2010 13:27:22 -0700 Subject: [sfld-help] more comments on sfld Message-ID: <a8d66bb11003201327m1c43d7d0v140bcc4ac1f2fd6e@mail.gmail.com> http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=structs&type=xray&level=family&id=56 page is blank #2 On this page http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=structs&type=xray&level=subgroup&id=158 there are family and functional domain annotations yet on the previous page http://sfld.rbvi.ucsf.edu/cgi-bin/SFLDvm.py?view=superfamily&id=4 familes is empty. Is this correct? thanks