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<p>Normally, you should send email to <a class="moz-txt-link-abbreviated" href="mailto:support@wynton.ucsf.edu">support@wynton.ucsf.edu</a> about
using software on the Wynton HPC cluster. That said, if want to
run a job on a compute node, ChimeraX would need to run in nogui
mode. So you would prototype the script on your laptop, then
submit it as a job on the compute cluster.</p>
<p><br>
</p>
<p>In my other role as your professor's system administrator, I can
install ChimeraX for you on wynton. I'll send you email when
that's done.<br>
</p>
<p><br>
</p>
<p> -- Greg</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 2/4/2022 2:42 PM, Rangarajan, Amith
via ChimeraX-users wrote:<br>
</div>
<blockquote type="cite"
cite="mid:SJ0PR05MB7455F1AC09227FAFAC7C2C7CF9299@SJ0PR05MB7455.namprd05.prod.outlook.com"><!-- BaNnErBlUrFlE-HeAdEr-start -->
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!important;visibility:hidden;mso-hide:all;font-size:1px;color:#ffffff;line-height:1px;max-height:0px;max-width:0px;opacity:0;overflow:hidden;">
Hi, This question is relevant for UCSF only. I have a set of
docked poses that i want to analyze using chimera x script (
check ligand RMSDs, distances etc...) . My laptop is not that
great, so i can use Wynton, if possible, to do this .
</span>
<!-- Preheader Text : END -->
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200px;background-color: #D0D8DC; border-top: 4px solid #90a4ae;"
lang="en">
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margin: 0px 0px 1px 0px; max-width: 600px;">
<div class="pfptBannerTitle" style="color:#000000
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From an External Sender </div>
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<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
Hi,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
This question is relevant for UCSF only.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
I have a set of docked poses that i want to analyze using
chimera x script ( check ligand RMSDs, distances etc...) . My
laptop is not that great, so i can use Wynton, if possible, to
do this .</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
is chimerax available on Wynton nodes?</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
if so, please give me a short intro to get started on using
chimerax on Wynton.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
thanks,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
amith</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb(255,
255, 255);">
I </div>
<br>
<fieldset class="moz-mime-attachment-header"></fieldset>
<pre class="moz-quote-pre" wrap="">_______________________________________________
ChimeraX-users mailing list
<a class="moz-txt-link-abbreviated" href="mailto:ChimeraX-users@cgl.ucsf.edu">ChimeraX-users@cgl.ucsf.edu</a>
Manage subscription:
<a class="moz-txt-link-freetext" href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a>
</pre>
</blockquote>
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