<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
</head>
<body>
<p>Use the Help / Report a Bug dialog and include your pdbqt file
(or a smaller one the replicates the bug), and we'll be able to
figure out what's going on. It could be a change in the pdbqt
format, or a bug in our code. And with the example pdbqt file, we
will be able to verify that any change to fix it, actually works.<br>
</p>
<p> -- Greg<br>
</p>
<div class="moz-cite-prefix">On 12/12/2021 8:12 AM, Visvaldas K. via
ChimeraX-users wrote:<br>
</div>
<blockquote type="cite"
cite="mid:2131547599.663620.1639325576837@mail.yahoo.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div class="yahoo-style-wrap" style="font-family:Helvetica Neue,
Helvetica, Arial, sans-serif;font-size:16px;">
<div dir="ltr" data-setdir="false">Dear colleagues,</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">for some reason ChimeraX does
not recognize pdbqt from Autodock Vina 1.1.2 as a "docking
file", even though it opens pdbqt file just fine <span>(<span>The
message: No suitable models found for ViewDockX)</span></span>.
The documentation says that Autodock Vina is supported.</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">Perhaps it's the version of
Vina (I use 1.1.2, or preferably its fork Smina, while the
newest version is 1.2)?</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">If I knew what the file that
ChimeraX recognizes as a "model" looks like, I'd write a
script to reformat my pdbqt, but at the moment I'm in the
dark... Not too bad since I still can view the structures, but
perhaps I'm missing some cool features...<br>
</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">Thank you in advance,</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false">Vis</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false"><br>
</div>
<div dir="ltr" data-setdir="false"><span></span><br>
</div>
</div>
<br>
<fieldset class="moz-mime-attachment-header"></fieldset>
<pre class="moz-quote-pre" wrap="">_______________________________________________
ChimeraX-users mailing list
<a class="moz-txt-link-abbreviated" href="mailto:ChimeraX-users@cgl.ucsf.edu">ChimeraX-users@cgl.ucsf.edu</a>
Manage subscription:
<a class="moz-txt-link-freetext" href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a>
</pre>
</blockquote>
</body>
</html>