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Great, thank you!
<div class="">So, it should also work when running everything from the shell ($ chimerax command-file.cxc), right? That would be ideal, since I like having a quit command at the end of the command file (not included in my example), allowing me to run it all
from the shell and get my shell prompt back when the chimerax terminates.
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Guillaume</div>
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<div class="">On 30 Sep 2021, at 00:31, Tom Goddard <<a href="mailto:goddard@sonic.net" class="">goddard@sonic.net</a>> wrote:</div>
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<div class="PlainText">Hi Guillaume,<br class="">
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Ok I fixed crossfade so it will work during movie recording when the graphics pane is not shown.<br class="">
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<span class="Apple-converted-space"> </span><a href="https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5311" class="">https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5311</a><br class="">
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Tom<br class="">
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<br class="">
> On Sep 29, 2021, at 11:56 AM, Tom Goddard via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:<br class="">
><span class="Apple-converted-space"> </span><br class="">
> Hi Guillaume,<br class="">
><span class="Apple-converted-space"> </span><br class="">
> Thanks for the complete command script that demonstrates the problem. From the wrong movie I can see that it crossfades from entirely black to the intended image. In testing I find that it fades from entirely black (actually in my test it was solid red)
because when the crossfade command is run it grabs the current image being shown in the graphics on screen, then fades that to the next rendered image. But if you have the file history thumbnails displayed where the graphics is normally, then the apparently
graphics was not rendered to the screen and crossfade gets all black. If you hide the file history thumbnails before you open your script (use the Recent Files toolbar icon, or the lighting bolt icon in the lower right corner of main window), then the movie
records correctly.<br class="">
><span class="Apple-converted-space"> </span><br class="">
> Usually the file history thumbnails are hidden automatically when the first model is opened. I will have to look at why that is not happening when opening a script. I will make a bug report and see if I can fix that.<br class="">
><span class="Apple-converted-space"> </span><br class="">
> Tom<br class="">
><span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
>> On Sep 29, 2021, at 2:02 AM, Guillaume Gaullier via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> Hello,<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> I am using ChimeraX version 1.2.5 (2021-05-24) on macOS 10.15.7. When trying to generate a simple movie with the attached command file, I get the attached wrong result in which the crossfade command seems to fail (instead of a smooth transition, I only get
a flashing black screen for a few frames). A similar problem happens with the same version of ChimeraX on Rocky Linux 8.4.<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> Instead of loading the command file from a fresh session (with 'open command-file.cxc'), I tried to prepare my models first, and then sent the commands generating the movie all at once (separated by semi-colons). When I did it this way, I got the correct
result (also attached).<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> Is there anything I am doing wrong, or is this a bug? I am pretty sure the command file version worked correctly in a previous version of ChimeraX, because I have done this before. Unfortunately, I don’t remember which version it was (but probably 1.1, since
it was just last year).<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> I would appreciate any help with this.<br class="">
>> Thank you in advance,<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> Guillaume<br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här:<span class="Apple-converted-space"> </span><a href="http://www.uu.se/om-uu/dataskydd-personuppgifter/" class="">http://www.uu.se/om-uu/dataskydd-personuppgifter/</a><br class="">
>><span class="Apple-converted-space"> </span><br class="">
>> E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here:<span class="Apple-converted-space"> </span><a href="http://www.uu.se/en/about-uu/data-protection-policy" class="">http://www.uu.se/en/about-uu/data-protection-policy</a><br class="">
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<div class="PlainText">>><span class="Apple-converted-space"> </span><br class="">
>> _______________________________________________<br class="">
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>> Manage subscription:<br class="">
>><span class="Apple-converted-space"> </span><a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a><br class="">
><span class="Apple-converted-space"> </span><br class="">
> _______________________________________________<br class="">
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> Manage subscription:<br class="">
><span class="Apple-converted-space"> </span><a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a><br class="">
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<span id="cid:833211B7E844504F95ED298A5DC0BE4F@user.uu.se"><command-file.cxc></span><span id="cid:F6C0ADCF145EB04F89053E92A692E1C6@user.uu.se"><correct-result.mp4></span><span id="cid:3BF4EB1437835F48900A8D4E21BCAC13@user.uu.se"><wrong-result.mp4></span></div>
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