<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Vincent,<div class=""><br class=""></div><div class=""> Check that your map is model #2 and your atomic structure is model #1 by looking at the id numbers in the Models panel. Also if you hover the mouse over an atom you can check that your atomic structure as chain A.</div><div class=""><br class=""></div><div class=""> I see that If you get the model numbers wrong the command does not warn you that nothing was colored. I will fix that so it gives a warning.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Sep 20, 2021, at 2:45 AM, vincent Chaptal via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta charset="UTF-8" class=""><font size="+1" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><font face="monospace" class="">Dear ChimeraX users,<span class="Apple-converted-space"> </span><br class=""><br class="">I just subscribed so apologies if this has been asked before.<span class="Apple-converted-space"> </span><br class=""><br class="">When is type the command: color zone #2 near #1/A distance 5 sharpEdges false farColor blue<br class=""><br class="">I have the volume #2 in blue with chain A colored by atom type: i.e. with carbons in sand, oxygens in red, nitrogens in blue.<span class="Apple-converted-space"> </span><br class=""><br class="">I tried to follow the tutorial on youtube, downloading the model and emdb like in the tutorial, and it does work like the tutorial, meaning colored by chain.<span class="Apple-converted-space"> </span><br class=""><br class="">I am wodering what is going on and how to fix it? I've seen this behavior for my protein, on a PDB refined from Phenix, or from a download from the rcsb.<span class="Apple-converted-space"> </span><br class="">I don't see anything special on the PDB, all the atoms are listed normally.<span class="Apple-converted-space"> </span><br class=""><br class=""><br class="">Is it possible to assign a specific color per chain using this command?<span class="Apple-converted-space"> </span><br class=""><br class=""><br class="">Thank you for your help.<span class="Apple-converted-space"> </span><br class="">best<br class="">Vincent<br class=""><br class=""><br class=""><br class=""></font></font><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class=""></span><div class="moz-signature" style="caret-color: rgb(0, 0, 0); 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