<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thanks !!! Worked perfectly</div>
<div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div id="Signature">
<div>
<meta content="text/html; charset=UTF-8">
<div id="divtagdefaultwrapper" dir="ltr" style="font-size:12pt; color:#000000; font-family:Calibri,Helvetica,sans-serif">
<p class="MsoNormal" style="margin-top: 0px; margin-bottom: 0px;margin-right:0px; margin-left:0px; color:rgb(34,34,34); font-family:Arial,Helvetica,sans-serif">
<span style="font-family:Calibri,Helvetica,sans-serif; color:rgb(56,56,56); font-size:10pt">Arun Gupta PhD, MRSC</span></p>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span>
<p class="MsoNormal" style="margin-top: 0px; margin-bottom: 0px;margin-right:0px; margin-left:0px; color:rgb(34,34,34); font-family:Arial,Helvetica,sans-serif">
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span><span style="font-family:Calibri,Helvetica,sans-serif; color:rgb(56,56,56); font-size:10pt">Research Fellow</span></p>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span>
<p class="MsoNormal" style="margin-top: 0px; margin-bottom: 0px;margin-right:0px; margin-left:0px; color:rgb(34,34,34); font-family:Arial,Helvetica,sans-serif">
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span><span style="font-family:Calibri,Helvetica,sans-serif; color:rgb(56,56,56); font-size:10pt">Challis & Lewandowski Group</span></p>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span>
<p class="MsoNormal" style="margin-top: 0px; margin-bottom: 0px;margin-right:0px; margin-left:0px; color:rgb(34,34,34); font-family:Arial,Helvetica,sans-serif">
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span><span style="color:rgb(56,56,56); font-family:Calibri,Helvetica,sans-serif; font-size:10pt">Chemistry Department</span></p>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span>
<p class="MsoNormal" style="margin-top: 0px; margin-bottom: 0px;margin-right:0px; margin-left:0px; color:rgb(34,34,34); font-family:Arial,Helvetica,sans-serif">
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt"></span><span style="font-family:"Helvetica Neue"; color:rgb(56,56,56)"><span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt">University of Warwick</span><br>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt">Gibbet Hill Road</span><br>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt">Coventry CV4 7AL</span><br>
<span style="font-family:Calibri,Helvetica,sans-serif; font-size:10pt">United Kingdom</span></span></p>
</div>
</div>
</div>
</div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>Sent:</b> Monday, August 30, 2021 3:46 PM<br>
<b>To:</b> Gupta, Arun <Arun.Gupta@warwick.ac.uk><br>
<b>Cc:</b> chimerax-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [chimerax-users] Region-wise specific sub-coloring of SS elements</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Hi Arun,<br>
If I understand your question correctly, you can do what you want by combining specifications using the "&" symbol, for example:<br>
<br>
color :1-300 & helix darkcyan<br>
color :301-500 & helix blue<br>
<br>
Combinations including intersections discussed here:<br>
<<a href="https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#combinations">https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#combinations</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
<br>
> On Aug 30, 2021, at 6:52 AM, Gupta, Arun via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:<br>
> <br>
> Dear ChimeraX team, <br>
> <br>
> Is there an easier way around by which we can do region-wise specific sub-coloring of secondary structural elements within a large protein instead of using the tedious way of identifying the secondary structural elements and then describing the residue wise
specific selection of set of residues related to secondary structure elements? I am aware that we can do coloring of specific secondary structure elements in ChimeraX by following commands for e.g “color helix “darkcyan” targ c”. But, I am looking forward
to do coloring, let’ say “all the helices within a protein from residues 1-300 as dark cyan and residues 300-500 as blue”
<br>
> <br>
> Thanks!!! <br>
> Arun <br>
<br>
</div>
</span></font></div>
</body>
</html>