<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Nathan,<div class=""><br class=""></div><div class=""> I guess you are not using the Python that comes with ChimeraX. You should start ChimeraX and use the ChimeraX command "open /path/to/myscript.py" to open it.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jun 29, 2021, at 7:25 PM, Nathan Wood via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" class="">
<div class=""><p class="">To Whom it May Concern,</p><p class=""><br class="">
</p><p class="">My name is Nathan Wood and I am currently a Google Summer of Code
Intern with the OpenChemistry Group. Currently I am currently in
the process of replacing Visualizing Molecular Dynamics (VMD) with
ChimeraX as a means to visualizing computationally generated
electrostatic potential diagrams. To accomplish this I am having
to use the Python API in a script. <br class="">
</p><p class=""><br class="">
</p><p class="">However, I am having difficulties enabling the Python API. When I
execute a Tutorials example found in the online developer's
documentation, I receive the error: <br class="">
</p><p class=""><i class="">ImportError: No module named chimerax.core.commands</i><i class=""><br class="">
</i></p><p class="">which suggests that the python modules were never installed
properly. I also recieve similar errors when attempting to import
the toolshed. <br class="">
</p><p class="">Otherwise, the ChimeraX GUI and its shell work properly and I am
unsure how to resolve the API error. <br class="">
</p><p class="">I am currently using the Generic Linux 64 Bit Daily Release and
can provide more information if necessary.<br class="">
</p><p class=""><br class="">
</p><p class="">Any assistance would be greatly appreciated</p><p class="">------------------------------------------------------<br class="">
</p><p class="">Very Respectfully, <br class="">
</p><p class="">Nathan Wood</p><p class="">Undergraduate Year 3, GSOC Intern</p><p class="">University of Florida <br class="">
</p>
</div>
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