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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Dear Eric,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Thank you for your help, though putting
</span><span style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">$B!H(B<span lang="EN-US">username:password@host</span>$B!I(B<span lang="EN-US"> in the
</span>$B!H(B<span lang="EN-US">Host</span>$B!I(B<span lang="EN-US"> fields didn</span>$B!G(B<span lang="EN-US">t work.<o:p></o:p></span></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Instead, I successfully installed the plugins (ISOLDE and its prerequisite Clipper) as below.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">- ChimeraX 1.2rc (1.2.4, May 14 version) was installed to CentOS7 using the provided rpm.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">- wheel files for the plugins (ISOLDE and its prerequisite Clipper) were downloaded from the ChimeraX Toolshed site.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">- pip install the plugins with the command below, executed as root (no need to set proxy at this time).<o:p></o:p></span></p>
<p class="MsoNormal" style="text-indent:11.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">/opt/UCSF/ChimeraX/bin/python3.8 -m pip install \<o:p></o:p></span></p>
<p class="MsoNormal" style="text-indent:22.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl \<o:p></o:p></span></p>
<p class="MsoNormal" style="text-indent:22.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">ChimeraX_Clipper-0.16.0-cp38-cp38-manylinux_2_17_x86_64.whl<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">By the way, can you provide an install package for RH7/8 which can be installed to a directory on NFS?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Since we have Unlimited User ChimeraX license, I$B!G(Bd like to install/update the package once for all our PCs.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Takaaki<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">-----<o:p></o:p></span></i></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Dr. Takaaki Fukami (<a href="mailto:fukamitka@chugai-pharm.co.jp"><span style="color:#0563C1">mailto:fukamitka@chugai-pharm.co.jp</span></a>)<o:p></o:p></span></i></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Protein Science Dept. (Protein Science 2 Gr.)<o:p></o:p></span></i></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Chugai Pharmaceutical Co.,Ltd.<o:p></o:p></span></i></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Eric Pettersen <pett@cgl.ucsf.edu>
<br>
<b>Sent:</b> Tuesday, May 18, 2021 2:11 AM<br>
<b>To:</b> Fukami,Takaaki </span><span style="font-size:11.0pt">$B?<3$N4L@(B</span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">(</span><span style="font-size:11.0pt">$B%?%s%Q%/<A2J3X8&5fIt(B</span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">2G)
<fukamitka@chugai-pharm.co.jp><br>
<b>Cc:</b> ChimeraX Users Help <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [chimerax-users] Proxy setting with user authentication<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">If your proxy does require a username and password, instead of just putting the host name in the "Host" field, you will have to put username:password@host.<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US">--Eric<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><br>
<br>
<o:p></o:p></span></p>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
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<p class="MsoNormal"><span lang="EN-US">On May 17, 2021, at 10:02 AM, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu">pett@cgl.ucsf.edu</a>> wrote:<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US">Hi Takaaki,<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span class="apple-tab-span"><span lang="EN-US"> </span></span><span lang="EN-US">You inform ChimeraX about your proxy settings by using the ChimeraX Settings dialog (on Linux that would be under Favorites...</span>$B"*(B<span lang="EN-US">Settings)
and going to the "Web Access" tab of that dialog. You will be able to fill in the proxy information there. Then click 'Save'. Let me know if you have any problems.<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US">--Eric<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span class="apple-tab-span"><span lang="EN-US"> </span></span><span lang="EN-US">Eric Pettersen<o:p></o:p></span></p>
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<p class="MsoNormal"><span class="apple-tab-span"><span lang="EN-US"> </span></span><span lang="EN-US">UCSF Computer Graphics Lab<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><br>
<br>
<o:p></o:p></span></p>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
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<p class="MsoNormal"><span lang="EN-US">On May 17, 2021, at 4:18 AM, <<a href="mailto:fukamitka@chugai-pharm.co.jp">fukamitka@chugai-pharm.co.jp</a>> <<a href="mailto:fukamitka@chugai-pharm.co.jp">fukamitka@chugai-pharm.co.jp</a>> wrote:<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Dear ChimeraX developers,</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"> </span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">I</span><span style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">$B!G(B<span lang="EN-US">m a new user of ChimeraX.</span></span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">How can I set username/password for HTTP/HTTPS proxy settings?</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Our firewall is strict and requires username/password authentication.</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"> </span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">I</span><span style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">$B!G(B<span lang="EN-US">d like to install ISOLDE (we purchased the
license), but I can</span>$B!G(B<span lang="EN-US">t install it via Tools > More Tools...</span></span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (</span><span lang="EN-US"><a href="https://jpn01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcxtoolshed.rbvi.ucsf.edu%2Fapps%2Fchimeraxisolde&data=04%7C01%7Cfukamitka%40chugai-pharm.co.jp%7C7ecb50ced4ea4f5b96d908d91956c44b%7Ca5bd0d07eca34fda98217c858c9deb8a%7C0%7C0%7C637568682793207475%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=NajP0LtRpviYl8Ix4DhKE%2BNPFQR1bmTs3cMDm3lUP4M%3D&reserved=0"><span style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B;color:#954F72">https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde</span></a></span><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">),</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">and tried the command below in ChimeraX windows,</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph;text-indent:11.0pt">
<span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">but failed during pip install (by SSLError, which means proxy was not set correctly).</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked.</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"> </span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Best regards,</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"> </span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B">Takaaki</span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><span lang="EN-US" style="font-size:11.0pt;font-family:$B^b%4%7%C%/(B"> </span><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">-----</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Dr. Takaaki Fukami (</span></i><span lang="EN-US"><a href="mailto:fukamitka@chugai-pharm.co.jp"><i><span style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#0563C1">mailto:fukamitka@chugai-pharm.co.jp</span></i></a></span><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">)</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Protein Science Dept. (Protein Science 2 Gr.)</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Chugai Pharmaceutical Co.,Ltd.</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">200 Kajiwara, Kamakura, 247-8530 Japan</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:justify;text-justify:inter-ideograph"><i><span lang="EN-US" style="font-size:10.0pt;font-family:"Times New Roman",serif;color:#002060">Tel: +81-467-47-6178</span></i><span lang="EN-US" style="font-size:10.5pt;font-family:$B^b%4%7%C%/(B"><o:p></o:p></span></p>
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