<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">I don't think so, although they should be highly correlated if the model is well fit to the density. <div class=""><br class=""></div><div class="">The Q-score as I understand it is more akin to a per-atom correlation of a map simulated from the atomic model with the experimental density map, whereas just sampling the local resolution at atom positions does not depend the model in the same way.</div><div class=""><br class=""></div><div class="">Oli<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On May 19, 2021, at 10:02 AM, Reza Khayat <<a href="mailto:rkhayat@ccny.cuny.edu" class="">rkhayat@ccny.cuny.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta charset="UTF-8" class=""><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class="">Isn't this what Q-scores does?<br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class=""><a href="https://www.nature.com/articles/s41592-020-0731-1" class="">https://www.nature.com/articles/s41592-020-0731-1</a><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class="">Best wishes,<br class="">Reza<br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class=""><br class=""></div><div id="Signature" style="caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none;" class=""><div name="divtagdefaultwrapper" style="font-family: Calibri, Arial, Helvetica, sans-serif; margin: 0px;" class="">Reza Khayat, PhD<div class="">Associate Professor </div><div class="">City College of New York</div><div class="">Department of Chemistry and Biochemistry</div><div class="">New York, NY 10031</div></div></div><div style="caret-color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); text-decoration: none; word-wrap: break-word; line-break: after-white-space;" class=""><hr tabindex="-1" style="display: inline-block; width: 311.625px;" class=""><span class="Apple-converted-space"> </span><div id="divRplyFwdMsg" dir="ltr" class=""><font face="Calibri, sans-serif" style="font-size: 11pt;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>ChimeraX-users <<a href="mailto:chimerax-users-bounces@cgl.ucsf.edu" class="">chimerax-users-bounces@cgl.ucsf.edu</a>> on behalf of Oliver Clarke <<a href="mailto:olibclarke@gmail.com" class="">olibclarke@gmail.com</a>><br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>Wednesday, May 19, 2021 9:58 AM<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span>Ioannis Skalidis<br class=""><b class="">Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a><br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>[EXTERNAL] Re: [chimerax-users] Colour residues by local resolution estimation map</font><div class=""> </div></div><div class="">Hi Yiannis,<div class=""><br class=""></div><div class="">I am not sure whether this is possible in ChimeraX yet, but you can do this in Chimera using a combination of `Values at Atom Positions` and `Render by Attribute`.</div><div class=""><br class=""></div><div class=""><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cgl.ucsf.edu_chimera_docs_ContributedSoftware_density_density.html&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=qUJvH5WM1Uut64mw5EYEiH3-YEyReOn0xpoA7yvhA-U&s=uZil8qWzh3fWtec_Fqpi76PvfP_xEH84sjxKOmU2NcM&e=" class="">https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/density/density.html</a></div><div class=""><br class=""></div><div class=""><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cgl.ucsf.edu_chimera_docs_ContributedSoftware_render_render.html&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=qUJvH5WM1Uut64mw5EYEiH3-YEyReOn0xpoA7yvhA-U&s=EcDDHlqwuPUuSmFKeR9RKJqK4iCHIwkx5__4ARdhxzc&e=" class="">https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/render/render.html</a></div><div class=""><br class=""></div><div class="">Cheers</div><div class="">Oli<br class=""><div class=""><br class=""><blockquote type="cite" class=""><div class="">On May 19, 2021, at 9:22 AM, Ioannis Skalidis <<a href="mailto:johnskalidis@gmail.com" class="">johnskalidis@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear all,<br class=""><br class="">I am trying to color a protein model based on the local resolution of the corresponding map. I can color the overall surface of the model, but not the residues themselves. Is there a way to do this, e.g, color the model backbone somehow?<br class=""><br class="">Thanks a lot for your help!<br class=""><br class="">Cheers,<br class="">Yiannis<br class=""><br class="">--<span class="Apple-converted-space"> </span><br class=""><br class=""><br class=""><br class="">Skalidis Ioannis, MSc<br class="">Biochemistry & Cryo-EM Scientist<br class="">PhD Candidate<br class="">Kastritis Laboratory for Biomolecular Research<br class="">Cryo-Electron Microscopy & Computational Structural Biology<br class=""><br class="">________________________________________________<br class="">Martin-Luther-Universität Halle-Wittenberg<br class="">Biozentrum, Room A.2.21<br class="">IWE ZIK HALOmem NWG III<br class="">"Kryo-Elektronenmikroskopie an Membranproteinkomplexen"<br class="">Weinbergweg 22, 06120 Halle<br class="">tel: +49 345 5524986<br class="">web (Lab):<span class="Apple-converted-space"> </span><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__blogs.urz.uni-2Dhalle.de_kastritislab_&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=qUJvH5WM1Uut64mw5EYEiH3-YEyReOn0xpoA7yvhA-U&s=F8u6f46yJPq4JGahIH83mWVmZ3geIKKmfDBflEErTrU&e=" class="">https://blogs.urz.uni-halle.de/kastritislab/</a><br class="">web (HALOmem):<span class="Apple-converted-space"> </span><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.halomem.de_en_&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=qUJvH5WM1Uut64mw5EYEiH3-YEyReOn0xpoA7yvhA-U&s=oZIpdUBecbspvVsRFJJT9xsdY2yIXMivutjsIbCdHdk&e=" class="">https://www.halomem.de/en/</a><br class=""><br class="">_______________________________________________<br class="">ChimeraX-users mailing list<br class=""><a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="">ChimeraX-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class=""><a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a><br class=""></div></div></blockquote></div><br class=""></div></div></div><br class="Apple-interchange-newline"></div></blockquote></div><br class=""></div></body></html>