<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Chimera is available from the "Download" link on the Chimera home page: <a href="http://www.cgl.ucsf.edu/chimera" class="">www.cgl.ucsf.edu/chimera</a>.<div class=""><br class=""></div><div class=""><div class="">--Eric</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div><div><br class=""><blockquote type="cite" class=""><div class="">On Apr 7, 2021, at 8:59 AM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear Marco,<br class="">The instructions in the LigParGen tutorial are about using the Chimera program, not ChimeraX. ChimeraX is a different program and does not (yet) have a Dock Prep tool. Both programs are available, so you could certainly just get Chimera and try it according to the instructions.<br class="">I hope this helps,<br class="">Elaine<br class="">-----<br class="">Elaine C. Meng, Ph.D. <br class="">UCSF Chimera(X) team<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class=""><br class=""><blockquote type="cite" class="">On Apr 7, 2021, at 12:30 AM, <a href="mailto:mdigennaro@uliege.be" class="">mdigennaro@uliege.be</a> wrote:<br class=""><br class="">Dear ChimeraX users,<br class=""><br class="">I am trying to follow this tutorial to get the proper residues:<br class=""><a href="http://zarbi.chem.yale.edu/ligpargen/gmx_tutorial.html" class="">http://zarbi.chem.yale.edu/ligpargen/gmx_tutorial.html</a><br class=""><br class="">I have found chimera (0.4.7) as pip module, but it's written in python2 and therefore no longer maintained.<br class="">Is there a chimerax module I can import?<br class="">Pychimera is also available and could install it with python2, but it also show compatibility problems with python3<br class="">Is DockPrep a separate module?<br class=""><br class="">I have found this thread on the chimera forum which doesn't really answer the question:<br class="">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2014-July/010115.html<br class=""><br class="">Generally, how do I get unknown/custom residues (from LigParGen in this case) for Gromacs input files.<br class=""><br class="">Thank you for your support<br class=""><br class="">Marco<br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">ChimeraX-users mailing list<br class=""><a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="">ChimeraX-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""></div></div></blockquote></div><br class=""></div></body></html>