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<span style="font-family: Arial, Helvetica, sans-serif;">Madeline,</span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;">It's also possible to add your own fragments to the substituents SEQCROW can use. Here's my solution to the thread that Elaine linked using SEQCROW:
</span><a href="http://plato.cgl.ucsf.edu/pipermail/chimerax-users/2021-February/001913.html" id="LPlnk480596"><span style="font-family: Arial, Helvetica, sans-serif;">http://plato.cgl.ucsf.edu/pipermail/chimerax-users/2021-February/001913.html</span></a><span style="font-family: Arial, Helvetica, sans-serif;">.
I know it can be a bit of a nuisance to build/acquire a structure for all the sidechains you might want t</span><span style="font-family: Arial, Helvetica, sans-serif;">o use - especially when
</span><span style="font-family: Arial, Helvetica, sans-serif;">SEQCROW is lacking some of the more biologically relevant pieces.
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<span style="font-family: Arial, Helvetica, sans-serif;">Best,</span><br>
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<span style="font-family: Arial, Helvetica, sans-serif;">Tony</span><br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> ChimeraX-users <chimerax-users-bounces@cgl.ucsf.edu> on behalf of Madeline Grace Rollins <m-rollins@northwestern.edu><br>
<b>Sent:</b> Wednesday, March 24, 2021 2:22 PM<br>
<b>To:</b> chimerax-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> [chimerax-users] SwissSidechain equivalent for ChimeraX</font>
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<div dir="ltr"><font color="BA0C2F">[EXTERNAL SENDER - PROCEED CAUTIOUSLY]</font><br>
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Hi all,</div>
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I would like to mutate a serine residue to phosphoserine for one of the proteins I am working with. I have used SwissSidechain in Chimera to do this in the past, but I was wondering if there is an equivalent module like SwissSidechain but for ChimeraX? I tried
downloading the SEQCROW bundle for structure editing, but I couldn't find the same range of sidechain derivatives. If not, can you use SwissSidechain in ChimeraX? I apologize in advance if this question has been asked already.</div>
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Thank you,</div>
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Madeline</div>
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