<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""><div class=""></div><div><br class=""><blockquote type="cite" class=""><div class="">On Feb 23, 2021, at 9:06 AM, Daniel Gurnon <<a href="mailto:danielgurnon@depauw.edu" class="">danielgurnon@depauw.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi all,<div class=""><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div class="">I'm interested in visualizing post translational modified positions in Chimera or ChimeraX, using the script generated by PhosphoSitePlus (PSP). I'm not able to get it working though, so I hope you can help:</div><div class=""><br class=""></div><div class=""><a href="https://www.phosphosite.org/proteinAction.action?id=4103&showAllSites=true" class="">Here's an example of a page with an available Chimera script.</a> From what I read in the <a href="https://www.rbvi.ucsf.edu/chimera/1.10/docs/webservices.html" class="">documentation</a> about web services, I should be able to click the script, and it will open in a locally running instance of Chimera. However, in Chrome, my only option is to download the script.</div><div class=""><br class=""></div><div class="">When I download and then try to open the script in ChimeraX (v 1.1), it tells me the ".chimerax" file type is not recognized. When I try to open it in the original Chimera (v1.15), I get the infinite spinning wheel of rainbows. These things occur whether or not I have the reference PDB structure loaded. Just to see what would happen, I also tried pasting the first command from the .chimerax file (<b class="">setattr a label Ser-89 :88.A@OG</b>) into Chimera and ChimeraX. The command executed successfully in Chimera, but in ChimeraX, I get the error</div><div class=""><br class=""></div><div class="">setattr a label Ser-89 <span style="background-color:rgb(255,0,0)" class="">:88.A@OG</span><br class=""><font color="#ff0000" class="">Expected a keyword</font><br class=""></div><div class=""><br class=""></div><div class="">Thanks in advance for the assistance,</div><div class="">Dan</div><div dir="ltr" class=""><span style="font-size:12.8px" class="">_</span><span style="font-size:12.8px" class="">_</span><span style="font-size:12.8px" class="">__________________________</span><br class=""></div><div dir="ltr" class=""><br class=""></div><div dir="ltr" class="">Daniel Gurnon, Ph. D.<div class="">Associate Professor of Chemistry and Biochemistry</div><div class="">DePauw University<br class=""></div><div class="">Greencastle, IN 46135</div></div></div></div></div></div></div></div>
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