<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Daniel,<div class=""><br class=""></div><div class=""> In theory you should be open your MRC files as a series with ChimeraX command "open map*.mrc vseries true". But the vseries option is currently broken as described in bug report</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/3519#comment:7" class="">https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/3519#comment:7</a></div><div class=""><br class=""></div><div class="">Probably Eric will fix that in a day or two.</div><div class=""><br class=""></div><div class=""> If you still prefer making the cmap file, ChimeraX is the only thing that writes those files, cmap stands for Chimera map, and I think you could run chimerax like "chimerax --nogui --exit --cmd "open maps*.mrc ; save map.cmap models #1-100" using the "--cmd" option described in the docs</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://www.rbvi.ucsf.edu/chimerax/docs/user/options.html" class="">https://www.rbvi.ucsf.edu/chimerax/docs/user/options.html</a></div><div class=""><br class=""></div><div class="">to run a command (here two commands separated by semicolon) instead of starting the ChimeraX GUI. Worked when I tried it. The "100" can be larger than the number of models without causing any errors so you don't need to know exactly how many maps you are saving.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jul 15, 2020, at 12:14 PM, Daniel Asarnow <<a href="mailto:asarnow@msg.ucsf.edu" class="">asarnow@msg.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="">Hi all,</div><div class="">I have only been able to load volume series data using the .cmap format (using a daily from this week on OS X). Is there a command-line utility, perhaps ChimeraX itself, that can generate a .cmap file from a number .mrc volumes? It would be nice to generate these on my processing machine and then only download the .cmaps to my laptop.<br class=""></div><div class=""><br class=""></div><div class="">Best,</div><div class="">-da<br class=""></div></div>
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