#
# Normally setup for a movie would be done interactively, saved to a session,
# and then loaded before running the animation commands.  To make this example
# self-contained we instead use commands to setup the scene here.
#

# Setup the potassium channel clipping scene.

#set fieldOfView 30
open /home/user/MASTERS/Chimera_files/testPDBfiles/Sys1nanopart.pdb
select :wat
hide sel target a
select ~sel
surface sel
color (#!1 & sel) white
select ::name="OQL"
color (#!1 & sel) red
select ::name="ONC"
color (#!1 & sel) blue
select ::name="NP"
color (#!1 & sel) yellow
lighting flat
lighting shadows false
graphics silhouettes false

#surface ; surfcolor bymodel
#align :401 :402 
#Error while sourcing clip2.cmd, line 11 "align :401 :402" Left atom spec (:401) selects no atoms

#set bg_color white
#set silhouette
#windowsize 200 150
#copy file clip.jpg

# ---------------------------------------------------------------------------
# Record the movie

movie record supersample 3
clip front -0.5 120
wait 120
movie encode clip.mp4 bitrate 200