<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">In Chimera, if there aren’t too many, you could select them with the mouse and then bring up the Selection Inspector (magnifying glass icon in the lower right corner of the Chimera window) and change “displayed” to “false”.<div class=""><br class=""></div><div class="">—Eric<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Apr 23, 2020, at 10:10 PM, Daniel Asarnow <<a href="mailto:asarnow@msg.ucsf.edu" class="">asarnow@msg.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="">I upgraded to the latest release ChimeraX (and Isolde) and this only happens when the CIF is then opened in old Chimera. In X it's fine.</div><div class=""><br class=""></div><div class="">Best,</div><div class="">-da<br class=""></div></div><br class=""><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Apr 22, 2020 at 11:04 PM Daniel Asarnow <<a href="mailto:asarnow@msg.ucsf.edu" class="">asarnow@msg.ucsf.edu</a>> wrote:<br class=""></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr" class=""><div class="">It's 0.92 nightly from March 8th, I'm running the ISOLDE beta from that time. I'll update to the 0.93 release and see what happens.</div><div class=""><br class=""></div><div class="">Also, I'm running Windows.</div><div class=""><br class=""></div><div class="">Thanks!<br class=""></div><div class=""><br class=""></div><div class="">-da<br class=""></div></div><br class=""><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Apr 22, 2020 at 10:56 PM Tristan Croll <<a href="mailto:tic20@cam.ac.uk" target="_blank" class="">tic20@cam.ac.uk</a>> wrote:<br class=""></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Is your ChimeraX version up to date? That used to be an issue, but I haven’t seen it for quite a while now.<br class="">
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> On 23 Apr 2020, at 06:51, Daniel Asarnow <<a href="mailto:asarnow@msg.ucsf.edu" target="_blank" class="">asarnow@msg.ucsf.edu</a>> wrote:<br class="">
> <br class="">
> Hi all,<br class="">
> When I save a CIF from ChimeraX, the missing segment pseudobonds are replaced by real (super unphysical) bonds. Can I do something about it, or is this a bug?<br class="">
> <br class="">
> Thanks and best,<br class="">
> -da<br class="">
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