<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span style="font-size:12.0pt; font-family:
"Times New Roman","serif"">Dear Elaine,
</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span lang="EN-US" style="font-size:12.0pt; font-family:"Times New Roman","serif"; mso-ansi-language:EN-US">Thank you so much for your help!</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span lang="EN-US" style="font-size:12.0pt; font-family:"Times New Roman","serif"; mso-ansi-language:EN-US">My Chimera was installed wrong, so I uninstalled and reinstalled a version compatible with my computer.</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span style="font-size:12.0pt; font-family:
"Times New Roman","serif"">Now I'm using Chimera perfectly.</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span style="font-size:12.0pt; font-family:
"Times New Roman","serif"">Thanks again</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span style="font-size:12.0pt; font-family:
"Times New Roman","serif"">Best regards</span></p>
<p style="margin: 0cm 0cm 10pt; line-height: 115%; font-size: 11pt; font-family: Calibri, sans-serif">
<span style="font-size:12.0pt; font-family:
"Times New Roman","serif"">Estela</span></p>
<br>
</div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>De:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>Enviado:</b> segunda-feira, 20 de abril de 2020 18:09<br>
<b>Para:</b> Estela Fernandes e Silva <star.fs@hotmail.com><br>
<b>Cc:</b> ChimeraX Users Help <chimerax-users@cgl.ucsf.edu><br>
<b>Assunto:</b> Re: [chimerax-users] Molecular Docking problem</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Hi Estela,<br>
If you downloaded the ligand file, you don't need to configure your browser to use Chimera ViewDock.<br>
<br>
Just start Chimera and start Viewdock (in menu under Tools... Surface/Binding Analysis) and then in the resulting dialog, choose and open the downloaded ligand file. I don't remember what format Swissdock outputs, but I know Chimera ViewDock is commonly used
for SwissDock results, so one of the format choices should work even though it doesn't say "swissdock":<br>
<<a href="http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/framevd.html">http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/framevd.html</a>><br>
<br>
Since I can't remember what format Swissdock outputs, I can't say if the ViewDockX tool in ChimeraX would work with it, but you could try that too.<br>
<<a href="http://rbvi.ucsf.edu/chimerax/docs/user/tools/viewdockx.html">http://rbvi.ucsf.edu/chimerax/docs/user/tools/viewdockx.html</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Apr 20, 2020, at 8:05 AM, Estela Fernandes e Silva <star.fs@hotmail.com> wrote:<br>
> <br>
> Dears,<br>
> Good night!<br>
> I'm starting to use SwissDock to investigate new drugs.<br>
> I'm having trouble viewing “the best result” through Chimera for Web (the browser cannot be configured)<br>
> In the option “Download your predictions file” I can open all the ligands through ChimeraX (my computer's desktop) at the same time. But I would like to see only one ligand at a time.<br>
> Would it be possible?<br>
> Best regards<br>
> Estela<br>
<br>
</div>
</span></font></div>
</body>
</html>