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<span style="font-size: 11pt; line-height: normal; font-family: Calibri, Helvetica, sans-serif;">Hi </span></div>
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<div style="margin: 0px"><span style="font-size: 11pt; line-height: normal; font-family: Calibri, Helvetica, sans-serif;">I followed similar " marker link " trick proposed by Tom for making new bonds between a selection of Serine residue of protein molecule
with hydroxy group functionality of ligand molecule typing the below mentioned command in ChimeraX command line . </span></div>
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<div style="margin: 0px"><span style="font-size: 11pt; line-height: normal; font-family: Calibri, Helvetica, sans-serif;">marker link #1:54@OG #2:PNS@HOP1@SG radius 0.2</span><br>
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<div style="margin: 0px"><span style="font-size: 11pt; line-height: normal; font-family: Calibri, Helvetica, sans-serif;">However, I am repeatedly getting following error. " </span><span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 11pt; orphans: 2; widows: 2; background: var(--white); line-height: normal;">TypeError:
Cannot bond atoms in different molecules "</span></div>
<div style="margin: 0px"><span style="color: rgb(0, 0, 0); font-family: "Times New Roman"; font-size: medium; orphans: 2; widows: 2; background: var(--white);"><br>
</span></div>
<div style="margin: 0px"><span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 11pt; orphans: 2; widows: 2; background: var(--white); line-height: normal;">Can you plz suggest the correct command or alternative way for making
new bond between Protein & ligand molecules. </span></div>
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<div style="margin: 0px"><span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 11pt; orphans: 2; widows: 2; background: var(--white); line-height: normal;">Thanks</span></div>
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<div style="margin: 0px"><span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 11pt; orphans: 2; widows: 2; background: var(--white); line-height: normal;">Arun </span></div>
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