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Hi Elaine,<br>
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grand, thanks for the quick response.<br>
<br>
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Much appreciated.<br>
<br>
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Best,<br>
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Karim <br>
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<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>Sent:</b> Thursday, April 2, 2020 7:12:14 PM<br>
<b>To:</b> Karim Rafie <karim.rafie@umu.se><br>
<b>Cc:</b> ChimeraX Users Help <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [chimerax-users] Show map only around certain selection</font>
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<div class="PlainText">Hi Karim,<br>
You can use the command "volume zone" with "newMap false":<br>
<<a href="http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#zone">http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#zone</a>><br>
<br>
For example, if your map is #2 and your atomic model is #1 with chain of interest B, could be something like:<br>
<br>
volume zone #2 near #1/B range 5 newMap false<br>
<br>
(or "near sel" to use currently selected atoms instead of "near #1/B" to specify the chain directly). Then to go back to the full map display, command:<br>
<br>
volume unzone #2<br>
<br>
<<a href="http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#unzone">http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#unzone</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Apr 2, 2020, at 9:36 AM, Karim Rafie <karim.rafie@umu.se> wrote:<br>
> <br>
> Dear all,<br>
> I was wondering how to show part of a map only surrounding certain residues, i.e. I have coordinates for a multiple-chain PDB but I only want to show the electron density surrounding one chain.<br>
> Any help would be greatly appreciated.<br>
> Best,<br>
> Karim<br>
<br>
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