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Hi Tom, <br>
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yes that'd be great.<br>
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Thanks for pointing out how to review the movie frames.<br>
<br>
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Best,<br>
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Karim <br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Tom Goddard <goddard@sonic.net><br>
<b>Sent:</b> Tuesday, January 28, 2020 8:14:28 PM<br>
<b>To:</b> Karim Rafie <karim.rafie@umu.se><br>
<b>Cc:</b> ChimeraX Users Help <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [chimerax-users] volume morph</font>
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<div>Would be nice if the volume morph showed a slider so you could move through the morph. I'll add a feature request for that.
<div class=""><br class="">
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<div class="">But you can replay the morph you created by adding the "model" option to the morph command, for example,</div>
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<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>volume morph #1,2 model #3</div>
<div class=""><br class="">
<div>which avoids creating a new morph which would happen if you rerun your command without the model option.</div>
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<div><span class="Apple-tab-span" style="white-space:pre"></span>Tom</div>
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<blockquote type="cite" class="">
<div class="">On Jan 28, 2020, at 10:33 AM, Karim Rafie <<a href="mailto:karim.rafie@umu.se" class="">karim.rafie@umu.se</a>> wrote:</div>
<br class="Apple-interchange-newline">
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Hi Elaine,<br class="">
<br class="">
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Thanks a ton. I'll give it a go ASAP.<br class="">
<br class="">
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Best,<br class="">
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Karim<span class="Apple-converted-space"> </span><br class="">
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<div id="x_divRplyFwdMsg" dir="ltr" class=""><font face="Calibri, sans-serif" class="" style="font-size:11pt"><b class="">From:</b><span class="Apple-converted-space"> </span>Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Tuesday, January 28, 2020 7:28:14 PM<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>Karim Rafie <<a href="mailto:karim.rafie@umu.se" class="">karim.rafie@umu.se</a>><br class="">
<b class="">Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a> <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [chimerax-users] volume morph</font>
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<font size="2" class="" style="font-family:Helvetica; font-style:normal; font-variant-caps:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none"><span class="" style="font-size:11pt">
<div class="PlainText">Hi Karim,<br class="">
Yes the morph is added as a new model. The command both creates the morph and plays it. However, the default is only 25 frames (playstep 0.04 frames 25) and may finish playing very quickly, so maybe you didn’t notice it. For example, commands<br class="">
<br class="">
open emdb:1283<br class="">
open emdb:1284<br class="">
volume morph #1,2<br class="">
<br class="">
…create #3 as the morph and quickly show it. Could try more frames if you want it to take longer:<br class="">
<br class="">
close #3; vol all show<br class="">
volume morph #1,2 playstep 0.01 frames 100<span class="Apple-converted-space"> </span><br class="">
<br class="">
See description of command options:<br class="">
<<a href="http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#morph" class="">http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#morph</a>><br class="">
<br class="">
I hope this helps,<br class="">
Elaine<br class="">
-----<br class="">
Elaine C. Meng, Ph.D. <span class="Apple-converted-space"> </span><br class="">
UCSF Chimera(X) team<br class="">
Department of Pharmaceutical Chemistry<br class="">
University of California, San Francisco<br class="">
<br class="">
> On Jan 28, 2020, at 10:06 AM, Karim Rafie <<a href="mailto:karim.rafie@umu.se" class="">karim.rafie@umu.se</a>> wrote:<br class="">
><span class="Apple-converted-space"> </span><br class="">
> Dear all,<br class="">
> I would like to create a morph movie between two volumes in ChimeraX, however I am having difficulties with generating it.<br class="">
> I am using the following command (e.g.) to "create" the morph:<br class="">
><span class="Apple-converted-space"> </span><br class="">
> volume morph #1,2 frames 50<br class="">
><span class="Apple-converted-space"> </span><br class="">
> After it has completed I get a new volume but I can't review the frames themselves, i.e. the output is a new map. I tried scouring the tutorials and command page but can't find a solution.<br class="">
><span class="Apple-converted-space"> </span><br class="">
> I tried it with the ChimeraX Ubuntu 16.04 distribution as well as the generic linux version.<br class="">
> Any help would be greatly appreciated.<br class="">
> Best wishes,<br class="">
> Karim<br class="">
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